Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0619 ATGAACGCAATGGATGTTCACCAAGACACACTGTCGTACATCAACGATTTTGAGCTGCACGACTTCGTTGACGATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGTGAGAATGAAGATGCCATCTGTGACTTCGGTTCTGACCTTGCAAACTCATTTGATCAGATCAATAATAATGCTGTGGATGTCTATGATCCAAGCTCCACATTTAGCTCCTTCTCTTGTTTTGATGGGGAGGTCAagggagaaggagaagaagaacatGATGGAGAGCATTCGTCTGGAACAACAACAACCACGACAACTAAGAATGCTAATGCCAAACCGAAACTAAAACCTGATAGGTCCAAGACTCTCGTTTCtgagaggaggaggaggggcCGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGATAAGGCTTCTATAATTGGAGACGCAGTGTCATACGTGCTCGACCTTCAAGCTCAAGCTAGGAAGCTGAAGGCTGAGGTTGCAGGACTTGAAGCATCCTTGTTAGTGTCTGAAAATTATCAAGGATCAATTAACAATCCCAACAATGTGCAAGTCGCCCGTAATGGTCTTCCAGTCTGCAAGACGATCATGCAGGTGGACATGTTTCAAGTGGAGGAAAGAGGGTATCATGCAAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCCTCACTCTACAGGGCTCTCGATTCTCTTGCAGGTTTTAATGTTCAGAATTCAAACCTGACTACAGTTTGTGACAATTTTCTACTTACATTTACATTGAATGTAAAAGGATCTGAACCAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTCGAATTCGTGGCATCCTTTCCTGCTTGA 915 0.4109 MNAMDVHQDTLSYINDFELHDFVDDPNFDQFINLIRGENEDAICDFGSDLANSFDQINNNAVDVYDPSSTFSSFSCFDGEVKGEGEEEHDGEHSSGTTTTTTTKNANAKPKLKPDRSKTLVSERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVLDLQAQARKLKAEVAGLEASLLVSENYQGSINNPNNVQVARNGLPVCKTIMQVDMFQVEERGYHAKIVCNKGEGVAASLYRALDSLAGFNVQNSNLTTVCDNFLLTFTLNVKGSEPEINLPNLKLWVTGALLNQGFEFVASFPA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0619 304 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 300 - -
Ssu8g0619 304 Coils Coil 160 180 - -
Ssu8g0619 304 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 300 - -
Ssu8g0619 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 187 IPR036638 GO:0046983
Ssu8g0619 304 Gene3D - 106 180 IPR036638 GO:0046983
Ssu8g0619 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Ssu8g0619 304 MobiDBLite consensus disorder prediction 81 125 - -
Ssu8g0619 304 SMART finulus 120 169 IPR011598 GO:0046983
Ssu8g0619 304 Pfam Helix-loop-helix DNA-binding domain 122 164 IPR011598 GO:0046983
Ssu8g0619 304 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0619 Ssu-Chr8 10139834 10141094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0619 4 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.768 1.55e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0619 HLH 7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0619 - - gmx:100805451 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0619 8 10139834 10141094 Ssu8g0619 8 10139834 10141094 ECH
Ssu8g0619 8 10139834 10141094 Ssu3g2434 3 75938403 75939738 PCT