Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0610 ATGCAGAGATCCGGTTATGGGTCCGACGGAACATACAGGTCTCTTAGACCTTCCCTCGTTTTACCCAAAAACCCCAACCTTTCCCTCGTTTCCCACCTCTTCAACAGAGTCGCTCCCTTTCCCTCCAAACCCGCCCTCATCGACGCCGACTCCTCCGAAACCCTTTCCTTCGCGCAGTTAAAGTCGCTAACCGTTAAAGTCTCCCACGGCCTCCTCCGCCTCGGCGTCGCCAAAAACGACGTCGTCCTCTTCCTCGCCCCCAACGACATCCGCTACCTCGTCTGCTTCCTCGCCGCCGTCTCCCTCGGCGCCGCCGTCACCACCGTCAACCCCGCCTACACCGCCGCCGAAGTCGCCAAACAAGCCGCCGACTCCAACCCCAAACTCGTCGTCACCGTCCCCGAACTATGGGACAAACTCAACCACCTCAACCTCCCCGCGGTCTTCCTCCGCTCCCACGCGCCCTCCAAGGCCACGAGCTTCGACGTGCTGGTCGAACTCGCCGGGTCGGCGACCGAGTTTCCGAATGTTGACGTTAAACAGAGCGACACGGCGGCGCTGCTGTACTCTTCCGGCACCACGGGCGTGAGCAAGGGCGTGGTTCTCACGCACGGGAACTTCGTAGCGGCGTCGTTGATGATTGGGATGGACGATGATTTGGCGGGGGAGATGCACAGCGTGTTTCTGTGCGTTTTGCCCATGTTTCATGTGTTTGGTTTGGCGGTGATTTCGTACGCGCAGCTTCAGAGGGGGAACGCGGTGGTGTCGCTGAAGAGGTATGAGTTTGAACTGGTTTTGAAGACGATTGAGAGGTTTAGGGTGACGCATTTGTGGGTTGTGCCGCCTATTTTTCTTGCTTTAGCGAAACACAGTTTGGTTGATAAGTATGATCTTTCGTCGTTGAAGCATATTGGTTCTGGCGCTGCTCCTCTGGGGAAAGAGTTGATGGAGGAGTGTGCTAGACGTTTCCCTCACGCCACTGTTTCTCAGGGATATGGTATGACTGAAACTTGTGGGATTGTTTCTGTGGAGAATACGAGGATGGGGATTCGGCATAGTGGCTCCGCAGGAATGCTTGTTACCGGAGTGGAAGCTCAGATAGTCAGTGTGGATACGCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTCCGGGGTCCTAATATGATGCAAGgTTATCACAACAATCCACAAGCCACAAGATTGACTATAGATAAAAAAAGGTGGGTACATACAGGAGATCTTGGATACTTTGATGAGGAAGGGCAACTTTTTGTTGTTGACCGTATCAAGGAATTGATCAAGTATAAAGGTTTTCAGGTTGCGCCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTTGATGCTGTTGTCATCCCATATCCCGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTTGTTCGTTCACCCAATAGTTCACTGACCGAGGAAGATGTTCAAAAGTTTATTGCTAATCagGTAGCGCCTTTCAAAAGATTACGAAGGGTGACATTCATCAATGCTGTTCCTAAAACAGCATCAGGGAAAATTCTACGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1611 0.5208 MQRSGYGSDGTYRSLRPSLVLPKNPNLSLVSHLFNRVAPFPSKPALIDADSSETLSFAQLKSLTVKVSHGLLRLGVAKNDVVLFLAPNDIRYLVCFLAAVSLGAAVTTVNPAYTAAEVAKQAADSNPKLVVTVPELWDKLNHLNLPAVFLRSHAPSKATSFDVLVELAGSATEFPNVDVKQSDTAALLYSSGTTGVSKGVVLTHGNFVAASLMIGMDDDLAGEMHSVFLCVLPMFHVFGLAVISYAQLQRGNAVVSLKRYEFELVLKTIERFRVTHLWVVPPIFLALAKHSLVDKYDLSSLKHIGSGAAPLGKELMEECARRFPHATVSQGYGMTETCGIVSVENTRMGIRHSGSAGMLVTGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTIDKKRWVHTGDLGYFDEEGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFIANQVAPFKRLRRVTFINAVPKTASGKILRRELIEKVRSKI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0610 536 Gene3D - 434 535 IPR045851 -
Ssu8g0610 536 Gene3D - 11 433 IPR042099 -
Ssu8g0610 536 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 535 - -
Ssu8g0610 536 Pfam AMP-binding enzyme C-terminal domain 447 522 IPR025110 -
Ssu8g0610 536 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 535 - -
Ssu8g0610 536 SUPERFAMILY Acetyl-CoA synthetase-like 23 534 - -
Ssu8g0610 536 Pfam AMP-binding enzyme 35 438 IPR000873 -
Ssu8g0610 536 CDD 4CL 21 528 - -
Ssu8g0610 536 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0610 Ssu-Chr8 9960120 9964273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0610 1 536 Monolignol Biosynthesis Gene Families AT4G05160 68.382 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0610 K01904 - gmx:100797843 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0610 8 9960120 9964273 Ssu8g0610 8 9960120 9964273 ECH
Ssu8g0610 8 9960120 9964273 Ssu3g2457 3 76292876 76297043 PCT