Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0605 ATGCACCCCCAAACCATGGAAAAGCTCCAGCTTTTCCGCGGTGACACTATCCTAATCAAGGGTAAGAAACGGAGGGATACAATTTGTATAGCTCTTGCCGATGAGAACTGTGAGGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCAAATTTGCGGGTTCGGCTTGGAGATGTTGTGTCTGTGCATCAGTGCCCGGATGTCAAGTATGGGAAACGTGTGCACATTCTGCCCATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTATTTCTTGGAGGCCTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGGGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGGAGAGTATTGTGTGGTTGCTCCAGACACTGAAATTTTCTGTGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAAAGGCTGGATGAAGTTGGGTATGATGATGTGGGTGGTGTCAGGAAACAAATGGCTCAGATTCGTGAGTTGGTTGAGCTTCCATTGAGGCATCCAcagctttttaaatcaattggtGTGAAACCTCCCAAAGGAATTTTACTTTACGGACCCCCAGGTTCTGGGAAGACATTAATAGCGAGAGCTGTAGCTAATGAAACTGGAGCTTTCTTCTTTTGTATTAATGGACCAGAGATTATGTCCAAATTGGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAAGCCGAAAAGAATGCACCATCCATTATCTTTATTGATGAAATTGATTCCATTGCCCCCAAGCGGGAGAAGACCCATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCTCGTGctcatgttattgttattggagCTACTAATCGTCCTAATAGCATCGACCCAGCATTGAGAAGATTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAGCTCTCTGATGATGTTGATCTAGAGAGAATTGCAAAAGATACTCATGGGTATGTTGGTGCTGACCTTGCTGCCCTTTGCACTGAAGCTGCTTTACAATGCATTAGGGAGAAGATGGATGTCATTGACTTGGAGGATGAGACTATTGATGCTGAAGTGCTGAATTCTATGGCAGTTACTAATGAACATTTCCAGACTGCACTTGGAACAAGCAACCCATCAGCTTTACGTGAAactGTTGTTGAAGTGCCTAATGTCAGCTGGGATGACattggaggccttgacaatgtCAAGCGTGAACTGCAAGAGACTGTTCAATATCCTGTTGAGCACCCAGAAAAATTTGAGAAGTTTGGTATGTCACCATCAAAAGGAGTCCTCTTCTATGGTCCTCCGGGATGTGGGAAGACTTTATTAGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAGGGTCCAGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCTAGACAATCGGCTCCATGTGTCCTCTTCTTTGACGAGCTTGACTCTATTGCCACTCAGAGAGGAGGCAGTGTTGGGGATGCAGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGCATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCAACTAACAGACCTGACATCATTGACCCAGCACTTCTACGGCCAGGCCGTCTGGATCAGTTGATCTATATTCCTCTTCCTGATGAGGAATCCCGTCATCAAATCTTCAAGGCCTGCTTGAGGAAGTCTCCTGTCTCAAAAGATGTTGATTTGGGAGCATTGGCTAGGTATACTCAAGGGTTCAGTGGTGCTGATATTACAGAAATATGCCAGCGAGCATGCAAATATGCTATAAGAGAAAACATAGAAAAGATGCAAAGTCACAACTTGGATAGGATCAGAGCTGTATTCTATGTGGATGAATTGGTTTTGGTTGGATTGGATTACTACAATGGTGCCAGTAGTCTTGGCACTGGGGCGCTGAgatttttttctagtttcaaGATTTTGATTAGCCTATGA 2142 0.4225 MHPQTMEKLQLFRGDTILIKGKKRRDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWDDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRHQIFKACLRKSPVSKDVDLGALARYTQGFSGADITEICQRACKYAIRENIEKMQSHNLDRIRAVFYVDELVLVGLDYYNGASSLGTGALRFFSSFKILISL 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0605 713 Pfam ATPase family associated with various cellular activities (AAA) 200 329 IPR003959 GO:0005524|GO:0016887
Ssu8g0605 713 Pfam ATPase family associated with various cellular activities (AAA) 473 606 IPR003959 GO:0005524|GO:0016887
Ssu8g0605 713 CDD AAA 166 329 - -
Ssu8g0605 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 421 IPR027417 -
Ssu8g0605 713 SMART CDC48_2_2 85 151 IPR004201 -
Ssu8g0605 713 SUPERFAMILY ADC-like 1 65 IPR009010 -
Ssu8g0605 713 Pfam Cell division protein 48 (CDC48), N-terminal domain 1 66 IPR003338 -
Ssu8g0605 713 Gene3D - 607 673 - -
Ssu8g0605 713 ProSitePatterns AAA-protein family signature. 300 318 IPR003960 GO:0005524|GO:0016887
Ssu8g0605 713 Gene3D - 430 606 IPR027417 -
Ssu8g0605 713 SMART CDC48_N_2 1 68 IPR003338 -
Ssu8g0605 713 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 2 672 IPR005938 GO:0016787
Ssu8g0605 713 ProSitePatterns AAA-protein family signature. 576 594 IPR003960 GO:0005524|GO:0016887
Ssu8g0605 713 Pfam AAA+ lid domain 352 394 IPR041569 -
Ssu8g0605 713 Pfam AAA+ lid domain 628 666 IPR041569 -
Ssu8g0605 713 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 1 672 - -
Ssu8g0605 713 Gene3D - 331 426 - -
Ssu8g0605 713 Gene3D - 165 329 IPR027417 -
Ssu8g0605 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 681 IPR027417 -
Ssu8g0605 713 Gene3D - 1 67 - -
Ssu8g0605 713 SMART AAA_5 196 332 IPR003593 -
Ssu8g0605 713 SMART AAA_5 469 608 IPR003593 -
Ssu8g0605 713 Pfam Cell division protein 48 (CDC48), domain 2 87 148 IPR004201 -
Ssu8g0605 713 SUPERFAMILY Cdc48 domain 2-like 67 159 IPR029067 -
Ssu8g0605 713 CDD AAA 439 606 - -
Ssu8g0605 713 PANTHER AAA-FAMILY ATPASE 1 672 - -
Ssu8g0605 713 Gene3D - 68 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0605 Ssu-Chr8 9815400 9820572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0605 402 677 Calmodulin-binding Proteins AT3G56690 46.739 5.43e-80 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0605 K13525 - gmx:100783508 1307.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0605 8 9815400 9820572 Ssu8g0605 8 9815400 9820572 ECH