Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0601 ATGAGAACCTTCCACTTATCTTGGATTTCTTTCTTCACTTGCTTTGTCTCAACGTTCGCAGCAGCCCCTCTTGTCCCCATCATCCGCGACGACCTCAACCTCACCAAAAACGACATTGGAAACGCCGGGGTTGCTTCTGTGTCCGGAAGCATTTTCTCTAGGCTTGCAATGGGTGCGATTTGTGACCTGTTGGGCCCACGCTATGGCTGCGCCTTCCTCATCATGCTCTCGGCCCCAACCGTGTTCTGCATGTCCTTTGTGATAGATGCTGCGGGGTATATAGCGGTTCGGTTCTTGATTGGGTTCTCCTTGGCCACGTTTGTGTCGTGCCAGTACTGGATGAGCACCATGTTCAACAGCAGGATTATAGGGCTTGCAAATGGGACTGCGGCGGGGTGGGGCAACATGGGTGGTGGAGCCACTCAGCTCATAATGCCTTTGGTGTATGAACTTATCAGAAGAGCTGGGGCCACTCCCTTCACTGCTTGGAGGATTGCCTTCTTCATTCCGGGCTGGTTGCATGTCATCATGGGGATCCTGGTCCTAACTCTAGGCCAGGACTTGCCTGATGGAAACCTTGGTGCCTTGCAGAAGAAGGGTGATGTAGCTAGAGATAAGTTTTCCAAGGTGTTATGGTATGCCATAAAAAATTACAGGACATGGGTTTTTGCCCTCCTCTATGGGTATTCAATGGGAGTTGAATTAACAACTGACAATGTCATTGCTGAGTATTTCTATGACAGGTTTAATCTCAAGCTGCACACTGCTGGAATCATTGCTGCTTCATTTGGAATGGCAAACCTAGTTGCTCGACCCTTTGGTGGATACGCTTCTGATGTTGCAGCCCGGTTGTTTGGCATGAGAGGCAGGCTGTGTACCCTCTGGATTCTCCAAACCTTAGGAGGGGTTTTCTGTATTTGGCTTGGCCGTGCCAATTCTCTTCCTATTGCTATCTTGGCTGTGATCCTGTTCTCTATAGGAGCTCAAGCTGCATGCGGTGCAACTTTTGGCATCATCCCTTTCATCTCAAGGAATTCTTTGGGGATTATATCAGGTCTTATTGGTGCAGGTGGCAACTTTGGGTCTGGCCTGACCCAATTGGTTTTCTTTTCAACCTCCAAAGTCTCCACTGCCACAGGTCTCTCCTTGATGGGTGTGATGATAGTGGGTTGCACTCTTCCTGTGAGTCTTGTTCACTTCCCACAGTGGGGTAGCATGTTCCTACCCCCCTCAAAAGATGTCAACAAATCTACTGAAGAGTTCTATTACACCTCTGAATGGAATGAGGAGGAGAGGCAGAAGGGCTTGCATCAGCAAAGTCTTAAGTTTGCTGTGAATAGCCGCTGTGAGAGAGGAAAGCGTGTGGCATCAGCCCCAACACCCCCAAATGCAACTCCCAATCATGTCTAG 1410 0.4936 MRTFHLSWISFFTCFVSTFAAAPLVPIIRDDLNLTKNDIGNAGVASVSGSIFSRLAMGAICDLLGPRYGCAFLIMLSAPTVFCMSFVIDAAGYIAVRFLIGFSLATFVSCQYWMSTMFNSRIIGLANGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGDVARDKFSKVLWYAIKNYRTWVFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARLFGMRGRLCTLWILQTLGGVFCIWLGRANSLPIAILAVILFSIGAQAACGATFGIIPFISRNSLGIISGLIGAGGNFGSGLTQLVFFSTSKVSTATGLSLMGVMIVGCTLPVSLVHFPQWGSMFLPPSKDVNKSTEEFYYTSEWNEEERQKGLHQQSLKFAVNSRCERGKRVASAPTPPNATPNHV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0601 469 Pfam Major Facilitator Superfamily 8 364 IPR011701 GO:0022857|GO:0055085
Ssu8g0601 469 CDD MFS_NRT2_like 4 397 IPR044772 GO:0015112
Ssu8g0601 469 SUPERFAMILY MFS general substrate transporter 2 396 IPR036259 -
Ssu8g0601 469 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 466 - -
Ssu8g0601 469 Gene3D MFS general substrate transporter like domains 1 192 IPR036259 -
Ssu8g0601 469 Gene3D MFS general substrate transporter like domains 203 403 IPR036259 -
Ssu8g0601 469 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 466 IPR044772 GO:0015112
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0601 Ssu-Chr8 9778270 9780459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0601 1 469 Inorganic Solute Cotransporters AT5G60770 80.171 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0601 K02575 - gmx:100782969 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0601 8 9778270 9780459 Ssu8g0601 8 9778270 9780459 ECH
Ssu8g0601 8 9778270 9780459 Ssu3g2464 3 76419879 76422330 PCT