Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0598 ATGAATATAGCGGGTTCAGCGAACATGAGTATAGAGAGGGGATTTGATTCTTGTTCAGCGAAAGGTCACTCGGTGGTGAAAACCAAGAGATGTAGTTCCAGGGGCAAGAAGGATCGCCACTCCAAGGTGAATGGGAGAGACCGTCGTGTTCGTTTGTCAACAATCTGTGCTGCTCGTATCTTCCAACTCACCCGTGAGCTAGGCCACAAGACAGTTGGCCAGACCATTGAGTGGCTCTTACGCCAGGCCGAGCCAGCGATTATTGCTGCCACTGGCACCGGCATTCCGCCTTCCAACAACACCTCGGTGCCACCGGAAGCAGTTGTTGCTGAGGATGCCAACTTGGTCCCCCGTGTTGCGGGCGTAAGGACAGTGCAGCCGGTTCCACCTTTCAATTTCGACTTTGATGGGTTGGCACACTCCGATTTAGacttttttgataattaa 447 0.5145 MNIAGSANMSIERGFDSCSAKGHSVVKTKRCSSRGKKDRHSKVNGRDRRVRLSTICAARIFQLTRELGHKTVGQTIEWLLRQAEPAIIAATGTGIPPSNNTSVPPEAVVAEDANLVPRVAGVRTVQPVPPFNFDFDGLAHSDLDFFDN 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0598 148 PANTHER TRANSCRIPTION FACTOR TCP23 24 102 - -
Ssu8g0598 148 Pfam TCP family transcription factor 35 101 IPR017887 -
Ssu8g0598 148 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 102 IPR005333 GO:0003700
Ssu8g0598 148 ProSiteProfiles TCP domain profile. 36 90 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0598 Ssu-Chr8 9681083 9681529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0598 37 99 TCP Transcription Factor Family AT5G23280 77.778 1.19e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu8g0598 TCP 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0598 - K16221 pvu:PHAVU_005G132500g 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0598 8 9681083 9681529 Ssu3g2468 3 76600594 76601097 PCT