Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0593 ATGAGATTTGCTGTCTACCTGGTGGAAAATTTGCGAAAGTATGTGATGTTTCAGAGAGGGTGCCTCCAGAAGTTAGTGCTTCTACTTCTGCTGATACTCTTACTGTCAATGAAACTGGGGTTGCGGCAAAAGGTAGTAATTCAGGTTCTTCGTCATCTATGTTGTACAATATTTCAAAGGAAAATAGTGCTGATCGGGGAGTTGGAAGTAGCTTTGGTCTTTCTTCGCGGCCAGATTATCAACAGAAGAAAGCTAAGCTCCTGTACATGCAAGAGGAGGTTAGCAGGCAATGCAAGCAGTACCATCTACAAATGCAAATGGTTAGTTTCATCGTTCGAGTCAGTAGCGGGTCTTGGTTCTGCTACTCCTTACATACCCATGGCTCTCAAGTCAGTATCAAAACACTTCAGGTGCCTAAAAAATTCTATCTCAGATCAGCTCAAACGTATAAGCGAAGCCTTGGGAGAGGATTTGTCAATGCCCACCACCAGTACTTGTAGTAAAGCTGACACAAACATGGCAAGGCTAAGGTGCATGGACCAAAGCTTTCTAAAGAACAAATCTGGCAGGGGTACCACGGACCTTCTTGAACCCCAACAGCATGTGTGGAGGCCCCAGAGAGGCTTGCCCGAACGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATGCTGGCTAGTCAAACAGGTCTTTCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGAGTGTGGAAGCCAATGGTTGAGGAAATGCACATGCTTGAAACAAAAGCAACAGGCTCCAAGGACAAGTGTGGTAAAACTGAGGGAACTTCTTCTGGCACTGAAGGTGATACCAGCCAGCCTAGAGTGGATAAGCCTTTGAGCAATAGTGGCAAGAATTCAATACCTGAAACCCAATTTCAGAGTATAGAGATGGGTTCATCCATAGCTGCCATTGCTGAGGAAAATGGGCTAAATAAAGAACAATGGAGTCAAGAGAAGCGGTCTAAATTGGAATGCCAGATGACTTCAAACATGGACGGTACACTGATGGGTTTTGTGCCATACCGACATGGTGGCCTTGAGGTTGGTGGACTTGGGTCAGTGTCACTAACATTGGGTCTTAGGCATGGTGTTGAAGGCgtacaacaccaacaacaattGCAAGAGGAGCAGCTTAGACATCACCTTGGAGGGCACATGATCCGTGACTTTGTGGGCTGA 1257 0.4495 MRFAVYLVENLRKYVMFQRGCLQKLVLLLLLILLLSMKLGLRQKVVIQVLRHLCCTIFQRKIVLIGELEVALVFLRGQIINRRKLSSCTCKRRLAGNASSTIYKCKWLVSSFESVAGLGSATPYIPMALKSVSKHFRCLKNSISDQLKRISEALGEDLSMPTTSTCSKADTNMARLRCMDQSFLKNKSGRGTTDLLEPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEMHMLETKATGSKDKCGKTEGTSSGTEGDTSQPRVDKPLSNSGKNSIPETQFQSIEMGSSIAAIAEENGLNKEQWSQEKRSKLECQMTSNMDGTLMGFVPYRHGGLEVGGLGSVSLTLGLRHGVEGVQHQQQLQEEQLRHHLGGHMIRDFVG 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0593 418 MobiDBLite consensus disorder prediction 282 317 - -
Ssu8g0593 418 Gene3D - 206 268 - -
Ssu8g0593 418 Pfam Homeobox KN domain 220 259 IPR008422 GO:0003677|GO:0006355
Ssu8g0593 418 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 108 390 - -
Ssu8g0593 418 MobiDBLite consensus disorder prediction 272 317 - -
Ssu8g0593 418 Pfam Associated with HOX 107 144 IPR006563 -
Ssu8g0593 418 SUPERFAMILY Homeodomain-like 205 271 IPR009057 -
Ssu8g0593 418 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 108 390 - -
Ssu8g0593 418 ProSiteProfiles 'Homeobox' domain profile. 200 263 IPR001356 GO:0003677
Ssu8g0593 418 SMART HOX_1 203 267 IPR001356 GO:0003677
Ssu8g0593 418 CDD homeodomain 203 264 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0593 Ssu-Chr8 9548318 9554093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0593 108 273 Homeobox Transcription Factor Family AT5G02030 58.929 4.79e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu8g0593 Homeobox_KN 8.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0593 - - gmx:100809720 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0593 8 9548318 9554093 Ssu8g0593 8 9548318 9554093 ECH
Ssu8g0593 8 9548318 9554093 Ssu3g2473 3 76697228 76702890 PCT