Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0577 ATGTCTGAGTGTAATGTTTTGGAACAGGATATTGCTAATATGAAGGACTCCTGGTTTTTCGACAATAACTTTAATGGTCTGTCAGATGAGATTTTTGATGATgtcatcaatttttttgatttcccACTGGATGATGTGGAAGCTAATGTTGTGGAAGAAGACTGCGATGCTCAATTTAAATGCCTTGAAGACCCACGTTTTGATGTTTTTTCAGCATCATCAGCTGGGCTGTGTGGCAAAGCTCAAAATGAAAGTCCCCAACTTGGGATGATGGGGTTCTCTGCTTCTTGTAACGGGATTTCTCCAATAAAACAGCTGGCAAAGGCTCCTGGAccaacatatggaaaaaccatTCCCCACCAGAATGCCCCTTTCAGTGGAAAAGATTTGCATCAATTCCAAACCAACAGCCCAGTTTCAGTTTTTGAAAACAGCAGTTCTTCCTCAGTTGAGAATTCCAACTTTGATCTACCTGTCATCCCAGCAAAACGCACTCGAAGTAAACGTCAGCGTCCTTCAAGCTTCAGTCCTGTATTTTCAATTCCATTCATCCTTAATTCACCAGCTTTGCAAAAACATCAAAGGACAGCTGCCTCTGAATTAGATTTTGGAACAAATGCTGCTGGGAATCTATCGAACAAAGTAAAAGGGCAAAGGAAAAAGGATTTGTCCCTGCTATCAGGTGATGATGTTGAGATGATGAGATCCTCATCACTGGAGTCAGTTCCCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGATACAGGTCTGGCCGCCTCTTTCCCGAATACAGGCCGGCAGCAAGCCCCACTTTTGTAGCATCACTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCAGTGCCATCCAGGAGGCTGTTAGGGGTTCTAAGTTGGCTTCATCAAATCTCCATGGAAATTCTGTaggataa 1002 0.4232 MSECNVLEQDIANMKDSWFFDNNFNGLSDEIFDDVINFFDFPLDDVEANVVEEDCDAQFKCLEDPRFDVFSASSAGLCGKAQNESPQLGMMGFSASCNGISPIKQLAKAPGPTYGKTIPHQNAPFSGKDLHQFQTNSPVSVFENSSSSSVENSNFDLPVIPAKRTRSKRQRPSSFSPVFSIPFILNSPALQKHQRTAASELDFGTNAAGNLSNKVKGQRKKDLSLLSGDDVEMMRSSSLESVPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSSAIQEAVRGSKLASSNLHGNSVG 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0577 333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 243 302 - -
Ssu8g0577 333 CDD ZnF_GATA 246 293 IPR000679 GO:0006355|GO:0043565
Ssu8g0577 333 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 32 311 - -
Ssu8g0577 333 Pfam GATA zinc finger 247 280 IPR000679 GO:0006355|GO:0043565
Ssu8g0577 333 Gene3D - 239 321 IPR013088 GO:0006355|GO:0008270
Ssu8g0577 333 SMART GATA_3 241 291 IPR000679 GO:0006355|GO:0043565
Ssu8g0577 333 ProSitePatterns GATA-type zinc finger domain. 247 272 IPR000679 GO:0006355|GO:0043565
Ssu8g0577 333 PANTHER GATA TRANSCRIPTION FACTOR 32 311 - -
Ssu8g0577 333 ProSiteProfiles GATA-type zinc finger domain profile. 241 277 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0577 Ssu-Chr8 9286207 9290060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0577 21 309 C2C2-Gata Transcription Factor Family AT1G08010 38.908 2.73e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu8g0577 GATA 3.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0577 - - gmx:100778675 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0577 8 9286207 9290060 Ssu8g0577 8 9286207 9290060 ECH
Ssu8g0577 8 9286207 9290060 Ssu3g2490 3 77219004 77223037 PCT