Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0576 ATGAAGGAAACCGAGAAGAGTTTGGATCCGCAGTTGTGGCACGCGTGCGCCGGCGGTATGGTTCAGATGCCGGCGGTGAACTCGAAGGTGTTCTACTTTCCGCAGGGTCACGCGGAACACGCGCACTCGAACGTGGATTTCGGAGCGTCGAGGATTCCGCCACTCATTCCGTGCCGCGTGGCAGCGGTGAAATTCCTCGCCGACCCCGAAACCGACGAGGTCTTTGCAATTTCGAGGTTGGTTCCTCTCAGGAACTCGGAGCTAGACTACGAAGAAAACGGTGCTCTTGAGGATAACGCCTCGGAGGGTTCGGAAAAGCCTGCGTCGTTTGCGAAGACGCTAACTCAATCCGACGCCAACAATGGCGGTGGGTTCTCCGTGCCGCGGTACTGCGCGGAGACAATTTTCCCGCGGCTGGACTACTCGGCGGAGCCCCCGGTGCAGACGGTGGTGGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCACGTCGGCACTTGCTGACGACGGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTGGCGGGGGACTCTATCGTGTTTCTGCGGGCCGAGAATGGGGATCTTTGCGTGGGGATTCGTCGGGCCAAGAGAGGGGGGCTTGGTGGGCCCGAGCCGCCGTGTGGGTGGAGTTCTGGTGGGCCTTATGGGGCCTTTTCTGCTTTCTTGAGGGAGGAGAGCAAGGTGGTGAGGAATGGGAATGGGAATGGGTGTGGGAGGCCGAAAGTGAGTGGTGAGTCTGTGAGGGAGGCTATTATGTTGGCTGCTAGTGGTCAACCGTTTGAGGTTGTTTATTACCCTCGAGCGAGTACTCCTGAGTTTTGTGTTAGGTCTTCGGCTGTGAGGGGGGCGATGAGGATTCAGTGGTGCTCTGGGATGAGGTTTAAGATGCCCTTTGAGACGGAGGATTCTTCCAGGATAAGCTGGTTCATGGGGACCATAGCTTCTGTTCAGGTTGTTGATCCTATCCGCTGGCCTAATTCCCCTTGGCGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGCTGCATAATGTGAAACGTGTAAGCCCATGGTTGGTTGAGTTGGTATCAAATGTGCCAATCATCCATCTGGCACCCTTCTCTCCACCAAGGAAGAAGCTTAGGTTTCCACAACACCCAGAGTTTCCCCTTGATGTTCAATTTCCAATACCAACGTTTTCAGGCAACCCCCTTGGGTCTAGCACTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTGACAGATCTCCACCTTAACAATAAGCTGCAGTTGGGGTTGCTTCCAACTAACGTTCGCCAGCTTGATTTGCACACTGGGATTTCTAATGGCAACATCACCAACCATGGTAAGGGTAAAGAAAGTTTATCATGCTTGCTGACCATGGCTAATTCACACAAGAGTCTGGAGAAATCTGATCATGTGAAGAGACaccaatttttactttttggtcaACCAATACTCACTGAGCAACAAATTTCTAGATCTCCTAGTGATGTGTTGTCTCAAAATTGCACCGCGACAGATGATGAGAATAAGGAGAAGAAGGGGTTTCTCAGTGACTCCCAGTCTTCAGTTTCACCAGGAAAGTCTTCTTCTACCGCTGAGTTCTCTTGGCAACTTAGTTCGGATACCAGCCATTGTAAGGTTTTCATGGAGTCAGAAGATGTGGGTCGAACCCTGGACTTGTCCTGTCTTGGTTCTTATGAAGAGTTGTACATGAGACTGGCCAACATGTTTGGAATAGAACGGTCTGAGATGTTGAGTCATGTACTCTACCGCGACGCAAGTGGTGCTCTTAAGCAAACTGGAGAAGAACCCTTCAGTGAGTTCATGAAGACAGCAAAAAGACTGACAATTCTGACTGATTCAAGCATCAAAGATAGTACAAGTCTGTTTTGCAGGGTTTGGATCACAGGAACTCGAAATGCTGAACATGGACTGAATGCATCAAATAAGACAGGTCCTCTGAGTATATTTGCTTAA 2079 0.5079 MKETEKSLDPQLWHACAGGMVQMPAVNSKVFYFPQGHAEHAHSNVDFGASRIPPLIPCRVAAVKFLADPETDEVFAISRLVPLRNSELDYEENGALEDNASEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGLGGPEPPCGWSSGGPYGAFSAFLREESKVVRNGNGNGCGRPKVSGESVREAIMLAASGQPFEVVYYPRASTPEFCVRSSAVRGAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNVPIIHLAPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNPLGSSTSSPLCCLSDNAPAGIQGARHAQIGISLTDLHLNNKLQLGLLPTNVRQLDLHTGISNGNITNHGKGKESLSCLLTMANSHKSLEKSDHVKRHQFLLFGQPILTEQQISRSPSDVLSQNCTATDDENKEKKGFLSDSQSSVSPGKSSSTAEFSWQLSSDTSHCKVFMESEDVGRTLDLSCLGSYEELYMRLANMFGIERSEMLSHVLYRDASGALKQTGEEPFSEFMKTAKRLTILTDSSIKDSTSLFCRVWITGTRNAEHGLNASNKTGPLSIFA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0576 692 CDD B3_DNA 109 210 IPR003340 GO:0003677
Ssu8g0576 692 ProSiteProfiles PB1 domain profile. 576 656 IPR000270 GO:0005515
Ssu8g0576 692 Gene3D - 573 660 - -
Ssu8g0576 692 Pfam Auxin response factor 267 349 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu8g0576 692 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677
Ssu8g0576 692 SUPERFAMILY DNA-binding pseudobarrel domain 105 211 IPR015300 -
Ssu8g0576 692 SMART B3_2 110 212 IPR003340 GO:0003677
Ssu8g0576 692 Gene3D - 304 376 - -
Ssu8g0576 692 MobiDBLite consensus disorder prediction 542 564 - -
Ssu8g0576 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 665 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu8g0576 692 MobiDBLite consensus disorder prediction 550 564 - -
Ssu8g0576 692 PANTHER AUXIN RESPONSE FACTOR 2 665 - -
Ssu8g0576 692 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Ssu8g0576 692 Gene3D - 108 212 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0576 Ssu-Chr8 9273743 9276576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0576 4 654 B3 DNA Binding Superfamily AT4G30080 61.791 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu8g0576 B3 3.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0576 - - gmx:100778135 1216.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0576 8 9273743 9276576 Ssu8g0576 8 9273743 9276576 ECH
Ssu8g0576 8 9273743 9276576 Ssu3g2491 3 77250703 77253688 ECH
Ssu7g2412 7 47054832 47057363 Ssu8g0576 8 9273743 9276576 ECH
Ssu4g1020 4 16385958 16388681 Ssu8g0576 8 9273743 9276576 ECH
Ssu8g0576 8 9273743 9276576 Ssu3g2491 3 77250703 77253688 PCT