Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0567 ATGGCGAAAGACGTTGAGCAGGTTACAGAGCAAGGTGAATACTCGGCGAAGGACTACCACGACCCACCTCCGGCGCCGTTGATCGACCCAGACGAGCTCACAAAGTGGTCTTTGTACAGAGCCGCCATAGCGGAGTTCATAGCCACCCTCCTCTTCCTTTACATCACCGTCTTGACCATTATTGGCTACAAGAGACAGAGTGATACCAATCTTCCCGGTAACACCGAATGTGACGGGGTTGGCATTTTGGGCATAGCTTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGCATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTGGGACGCAAGGTGTCGCTGGTGAGGGCGTTGCTGTACATGGTAGCACAGTGCGCCGGTGCAATCTGCGGTGCTGGGTTGGCGAAGGGCTTCCAGAAAGCGTACTACAACAGGTATGGAGGTGGGGTTAACCTTGTGAGCGGTGGCTACAACAAAGGTACCGCGTTGGGTGCTGAGATCATAGGTACCTTCGTTCTTGTCTACACCGTTTTCTCCGCTACTGATCCTAAGAGGAGCGCTAGGGACTCTCATGTTCCTgtattagcACCCCTACCCATTGGTTTTGCCGTGTTCATGGTTCACTTGGCTACAATCCCTGTCACCGGTACCGGCATTAATCCGGCGAGGAGTTTCGGACCAGCTGTAATCTTCAACAGCGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTATTGGAGCTGGGGTGGCTGCATTCTACCACCAATTCATTCTTAGAGCAGCAGCAATCAAAGCTCTTGGATCTTTCAGGAGCAACGCTTAA 864 0.5289 MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTNLPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMVAQCAGAICGAGLAKGFQKAYYNRYGGGVNLVSGGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNSDKAWDDQWIYWVGPFIGAGVAAFYHQFILRAAAIKALGSFRSNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0567 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Ssu8g0567 287 SUPERFAMILY Aquaporin-like 32 273 IPR023271 -
Ssu8g0567 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
Ssu8g0567 287 MobiDBLite consensus disorder prediction 1 25 - -
Ssu8g0567 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0567 287 PANTHER AQUAPORIN PIP2-7 1 287 - -
Ssu8g0567 287 MobiDBLite consensus disorder prediction 1 17 - -
Ssu8g0567 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Ssu8g0567 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0567 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0567 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0567 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0567 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0567 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0567 287 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0567 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0567 Ssu-Chr8 9155530 9157278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0567 1 287 Major Intrinsic Protein MIP AT2G37170 78.397 3.39e-166 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0567 K09872 - gmx:732604 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0567 8 9155530 9157278 Ssu8g0567 8 9155530 9157278 ECH
Ssu8g0567 8 9155530 9157278 Ssu3g2500 3 77417779 77419431 ECH
Ssu4g1022 4 16450786 16452363 Ssu8g0567 8 9155530 9157278 ECH
Ssu8g0567 8 9155530 9157278 Ssu3g2500 3 77417779 77419431 PCT