Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0565 ATGTCGACAATGCGATTGCCATGGAGTATAAGGCTGCCCCTACTCTTACTGATTCAACTTTTATACCCCAACAAATCAACCTATGAATTATACGCTGAGGCTTTGTTCACTTTCAAGGGTTCGCTTGGAGGTCCACAGCAATTCGGATGCAGCGTTGTGAAATATCCGTGTCAAATGCAATGGCCTTGTCTTGACTGCTATAAACTAAAAGATCCAGGTGGAATAACAGCAAAGATAGATGGGAATAATGACATTCCAACACTTACACCTCTTCAACAAACTCAAGTTAAAAAGCCAGGAGGAAGAAGGGCTGCTGCTATAGTTGGTATTGTTGTTGCTGCCTTTGTCGTCACTGTCATTTTGGTGACTGTCTATATCTGCTTGATGGGTGTTAAAAGATTTATGAGGCAAACATCTGAGATTGCTTCTTCTATGCCATCTCCCACTGTTGAGATGGGAAGAGTCAACAACACGCAGCATGTTAATGCTTTTACTCCACATTATAGGCAGAACACAAGGCAGTTAACAATTTTGGAACTAGAACAAGCTACACGAAATTTCAGTCATAGTAATATTATAGGTGAAGGTGGATTTGGTTTTGTATACAAAGGCTTGCTTCAAGATGGATCTATTGTGGCTATAAAAAGGCGTCTATTCGCTCTGGCACGGGATTTCGTCCTtgagGTGAAGCAGATAACTCATATTCACCACATCCATCTTGTCAAGCTTATAGGCTATTATGAAGATAGCTATCAACAATTACTTGTGTATGAATATCTCCCTAACGGCAATGTAGGGAGTCACCTATATGACAGTGAAGGTTTACCTATTGGAAGGTTAGACTTGTGGCGAAGGATAACTATTGCTTTAGGCGCGTCCAAAGGAGTGGAACACCTTCACAGTTTGGTCCCTCCTTTGGTTCACACAAATTTTAGAACTAGCAATGTTCTGTTAGATGAAAATTATACGGCCAAGGTTTCTGATTACGGATTCTGCAAATTGCAAACGAAAGCTGATCAGGCTGGCTCATCTTCAAATGTAGACTACTTTCTTGACCCAGAGTTGAGCTTTCCACAAAACTATTCAGAGAAGAGTGATGTATACAGTTTCGGGGTCTTCTTACTAGAGATGCTTAGTGGCTGCGAAGCGCATAACAGAAACATGTCAAACCCAGATGAAAATATAGTATTTCGGgcAAAAAATAGCGTTGACTTGGACAACTTTGTTGACATAACGCTGGGAGACCAAGAAAAGCATGTTGCTAGACGAATGATGAAGTTGGCGATGCTATGTGTGGATGTGACATCTAGAAGACCATCAATGGCACAAATTGTGCAAGAGTTGGAGCGGATTCAAAGAGAAATTGCTCCTCTGTATTCTCAATTCAACGACGAGATTGGTGCCGTGACTCTTGGGAGTGAGCTCTTTCAATAA 1434 0.4114 MSTMRLPWSIRLPLLLLIQLLYPNKSTYELYAEALFTFKGSLGGPQQFGCSVVKYPCQMQWPCLDCYKLKDPGGITAKIDGNNDIPTLTPLQQTQVKKPGGRRAAAIVGIVVAAFVVTVILVTVYICLMGVKRFMRQTSEIASSMPSPTVEMGRVNNTQHVNAFTPHYRQNTRQLTILELEQATRNFSHSNIIGEGGFGFVYKGLLQDGSIVAIKRRLFALARDFVLEVKQITHIHHIHLVKLIGYYEDSYQQLLVYEYLPNGNVGSHLYDSEGLPIGRLDLWRRITIALGASKGVEHLHSLVPPLVHTNFRTSNVLLDENYTAKVSDYGFCKLQTKADQAGSSSNVDYFLDPELSFPQNYSEKSDVYSFGVFLLEMLSGCEAHNRNMSNPDENIVFRAKNSVDLDNFVDITLGDQEKHVARRMMKLAMLCVDVTSRRPSMAQIVQELERIQREIAPLYSQFNDEIGAVTLGSELFQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0565 477 Pfam Protein tyrosine and serine/threonine kinase 190 448 IPR001245 GO:0004672|GO:0006468
Ssu8g0565 477 Gene3D Phosphorylase Kinase; domain 1 149 259 - -
Ssu8g0565 477 ProSitePatterns Protein kinases ATP-binding region signature. 193 215 IPR017441 GO:0005524
Ssu8g0565 477 SUPERFAMILY Protein kinase-like (PK-like) 167 458 IPR011009 -
Ssu8g0565 477 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 75 475 - -
Ssu8g0565 477 Gene3D Transferase(Phosphotransferase) domain 1 260 467 - -
Ssu8g0565 477 ProSiteProfiles Protein kinase domain profile. 187 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0565 477 PANTHER PROTEIN KINASE APK1A, CHLOROPLASTIC-LIKE 75 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0565 Ssu-Chr8 9125164 9128093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0565 94 455 Receptor kinase-like Gene Family AT4G02010 34.726 2.27e-53 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Ssu8g0565 PK_Tyr_Ser-Thr 5.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0565 - - gmx:100780443 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0565 8 9125164 9128093 Ssu8g0565 8 9125164 9128093 ECH