Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0561 ATGAGTGCTCAGGAAAAACATAACGCACCTTCGTCCAAACCAACAGTTTCTCTTCCACTTCACAAGGTGGATGATCCAATGGGGGTAGCCGATGAAACTGAAACCTCGCATGTTAATCATTGGAAGCGACAGAATCTTCAGCTGGAAATACCATCCAGAACATCAGAAGAGTCTCCTCAGGATTTTGTTGGAATAAGGATGCCACTGACACCGAGTCCAACTCCTAGTCATAAGAGAGTGAATTTTCTTGCCACTTCTCGCTCTGTTGATGCTCCGAGGCCTTCAGCATCGAGAGGCAAATCATCCATGAGAAGCATCTTGCCAAAATTGGGCTTCAGGAATCGGGCATCGCTTGATATTGAAAAGGCTACTACTGCAGCTCCTGAAGGTTCCCTTTCTGGCCATCAAGAGAAGTCTTCAATCTCAAGATCAGTGTCCCTAACAAAGATATTTACTCCTAAGATTAAGCGAACGTCTTCATTACCGGTAGAAGAAATTGGGCGTGCACACGCAGAATCTGCTCTGGGTGGAAGTCTTGGTGCTTCTCCATGTAGAAGAGAGACCCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATAGCAAAGAAAAGGGCATAAGGAGAATGGATTCAGTTTTCCGCATTATTCCTTCCACCCCTCGCGTAAATGAGAATGAAACAACAAAGGATACTGAAAATGGTGATGGTGAAGATATTGGTGTAGAGGAAGCCGTGTGTAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAAACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAGGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGCAAGAGGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACTCAGAATACTGGAGCAAGGTTCGAGCCGGGAGATGAATACAGGGTTTGGCAGGAACTCCCAGTGCTTGTCATTGTCGGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGCTGGTTGGAAAAATGAGAACCAAGGCAATTTTCATCTCTCTTCCATTTTCCTGTGTACTGGGTCTACTCTCCGCCGTAACATCATCAAACCATGGTGAAGAGCAGGTACACCTGGATTTATGCATCTGTCCAGTTTGTTTTGGTGGTCCTATTCGCCCACATATTTTACCCCTTGGTTGGTATGCATGCGGTTTTGTCGATCCTTCTTGCAACATTTGCTGGGTTTGGTGTGGCGATGAGTGGAAGTTCAATGCTTGTGGAGTTTTCTCGATGGAGAAGAAGATGGCTGGCTTTATCAGAGCAGCAGCAAGGTTCTGCAATGATTGCACAATACCCTCAAACTGCGGCGCAAAATCAACAAAGCTCAAATCAGAGCTGAATCGATGGCTGTATGGCTTCTTTCATATGGTCAACTAA 1467 0.4574 MSAQEKHNAPSSKPTVSLPLHKVDDPMGVADETETSHVNHWKRQNLQLEIPSRTSEESPQDFVGIRMPLTPSPTPSHKRVNFLATSRSVDAPRPSASRGKSSMRSILPKLGFRNRASLDIEKATTAAPEGSLSGHQEKSSISRSVSLTKIFTPKIKRTSSLPVEEIGRAHAESALGGSLGASPCRRETQGMIARSRSVPVNSKEKGIRRMDSVFRIIPSTPRVNENETTKDTENGDGEDIGVEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKQEVRNLPVTLLRIRSVQTQNTGARFEPGDEYRVWQELPVLVIVGMLAYFCFLEQLLVGKMRTKAIFISLPFSCVLGLLSAVTSSNHGEEQVHLDLCICPVCFGGPIRPHILPLGWYACGFVDPSCNICWVWCGDEWKFNACGVFSMEKKMAGFIRAAARFCNDCTIPSNCGAKSTKLKSELNRWLYGFFHMVN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0561 488 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 32 381 - -
Ssu8g0561 488 MobiDBLite consensus disorder prediction 25 39 - -
Ssu8g0561 488 PANTHER OS02G0165000 PROTEIN 32 381 - -
Ssu8g0561 488 MobiDBLite consensus disorder prediction 1 15 - -
Ssu8g0561 488 ProSiteProfiles Zinc finger RING-CH-type profile. 239 301 IPR011016 GO:0008270
Ssu8g0561 488 MobiDBLite consensus disorder prediction 1 42 - -
Ssu8g0561 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 299 IPR013083 -
Ssu8g0561 488 SUPERFAMILY RING/U-box 242 298 - -
Ssu8g0561 488 MobiDBLite consensus disorder prediction 87 108 - -
Ssu8g0561 488 CDD RING_CH-C4HC3_MARCH 247 295 - -
Ssu8g0561 488 Pfam RING-variant domain 247 294 IPR011016 GO:0008270
Ssu8g0561 488 SMART ringv_2 246 295 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0561 Ssu-Chr8 9070945 9074788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0561 244 301 C3H Transcription Factor Family AT2G37950 47.458 9.17e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0561 - - gmx:100815599 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0561 8 9070945 9074788 Ssu8g0561 8 9070945 9074788 ECH
Ssu8g0561 8 9070945 9074788 Ssu3g2506 3 77484266 77489591 PCT