Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0558 ATGGGGAATATCGGAAgcaggaggaggaggaggaggaggcgCCACCCCACTTCACAATCACAATCACAACCACAAGGGACAAACACAAACTACTACTCCTTTGCACCTCGCCCTCCTCACTACCCCAACACCCTTCTTCCTCCTTATCGGCACTACCCACAATCCTTTCCACCACCTTCCCTTCACCACGAGAAAGCTGTCACCATCAGGAATGATGTCAATATCAAGAAGGACACTCTTCGCATCGAGCCTGATCATCGCCATCCTCACCATTTTCTTGTCACTTTCACCTTTGATGCCACTGCTCCTGGATGCATTACGGTGATGTTTTTTGCCAAGGAAACTTTAGATGGTAAGCTGATAGCAGTGAAGAAAAGCTTGCTCAAACAAATCTCAACGCCTTTTCAGCAAGGTCTTTGTCAGAAATTCAGACAACCTTCTGGAACTGGCATTGAAATCTCAATGTTAGAGGAGACAGGACTAGCAAAAGAAGGTGATGCAGAAGTTTATCCTCTTGTGCTGAAGGCTGAGGCTCGACCATTAATCCGTTATGAAAATGAGGGAAACCCATCTTCTCAAATTACTTTGGCTAGTTTTGAGAAGAGGGAGAGAGGTGAGTACAAGGTCCAAGTAATGAAACAGGTTCTCTGGGTCAACGGGAAGAGGTATGAACTGCAGGAGATATATGGCATTGGGAATGTTAGTGATGTTGATGGCCACGAATCTAGTGGAGATTGTGTAATTTGTTTGTCAGAACCACGAGTTATAACTGTCCTCCCTTGCCGACACATGTGCATGTGCAGTGGCTGTGCCAATCTTCTGAAAGTTCATACAGCCAACTGTCCCATCTGTCGGCATCCAGTTGAGAGGCTTTtggaaattaaagtaaataatggATATGGTGATCAGTGA 912 0.432 MGNIGSRRRRRRRRHPTSQSQSQPQGTNTNYYSFAPRPPHYPNTLLPPYRHYPQSFPPPSLHHEKAVTIRNDVNIKKDTLRIEPDHRHPHHFLVTFTFDATAPGCITVMFFAKETLDGKLIAVKKSLLKQISTPFQQGLCQKFRQPSGTGIEISMLEETGLAKEGDAEVYPLVLKAEARPLIRYENEGNPSSQITLASFEKRERGEYKVQVMKQVLWVNGKRYELQEIYGIGNVSDVDGHESSGDCVICLSEPRVITVLPCRHMCMCSGCANLLKVHTANCPICRHPVERLLEIKVNNGYGDQ 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0558 303 MobiDBLite consensus disorder prediction 18 34 - -
Ssu8g0558 303 Pfam Zinc finger, C3HC4 type (RING finger) 244 290 - -
Ssu8g0558 303 SUPERFAMILY RING/U-box 245 291 - -
Ssu8g0558 303 MobiDBLite consensus disorder prediction 1 37 - -
Ssu8g0558 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 295 IPR013083 -
Ssu8g0558 303 SMART ring_2 246 284 IPR001841 -
Ssu8g0558 303 MobiDBLite consensus disorder prediction 1 17 - -
Ssu8g0558 303 ProSiteProfiles Zinc finger RING-type profile. 246 285 IPR001841 -
Ssu8g0558 303 PANTHER MAHOGUNIN 1 302 IPR045194 GO:0061630
Ssu8g0558 303 PANTHER - 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0558 Ssu-Chr8 9035006 9037570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0558 48 265 C3H Transcription Factor Family AT3G09770 52.814 2.81e-74 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0558 - - gmx:100816136 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0558 8 9035006 9037570 Ssu8g0558 8 9035006 9037570 ECH