Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0556 ATGGGAGATTGTAAGAGTTTTTCACTTTCCAAAATGATGGGCTGCTGTGGTTGCTTCGGATTCGTCCAAAAACCAAGACAGCGTCTGGCTAAACATGGCGTCAACAATTCTCTCTCCCAGGGGCTATTATTGGATGGAGAAACTGAAGGTGAGGAGACGTGTAGTGGTGAGGTTACTAGTAACGCCACCAGTGGAGATGATAATGAGGTGCAAGCTGTACGCAACCGTTCGGAGGATATTTTGAACTTTAGAGCTGAGAATGGCATGGTTTGTAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGTTCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAGTATGTTCGAGAGTATAAAATTGGTTCTGGGAGCTATGGCAAAGTGGCTCTTTATCAAAGTTGTGATGATGGAAAGCATTATGCAATTAAGGCCTTTCATAAGTCTCATTTACAAAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACCGATGTTCTGCGTGAgGTACTGATTATGAAAATGGTGGAACATCCTAATATAGTAAATCTCATTGAGGTGATTGATGACCCAGAGTCAGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTTTGTGAGGGTACAGGTCGTCCTTGTGCAATAGGTGAAGAGACTGCTAAGAAATACTTGCGTGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCGTCATGGCACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGGCAATGATGAACTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGGCTTACTTATCATGGTAAAGCTTCAGACACGTGGGCTGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATATCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGACGACATTAACCCCcagttaaagaaattaatagaagGATTACTGTGCAAAGACCCAGAACTAAGGATGACATTGGGCGATGTTGCTGAGCATATCTGGGTTATTGGAAATGATGGGCCAATTCCTGAATACTTATGTTGGTGCAAACGCAAGAGCCTGGTGACTGAAGATTTTGATGGGAGCGATGTACTTGCTTGA 1230 0.4187 MGDCKSFSLSKMMGCCGCFGFVQKPRQRLAKHGVNNSLSQGLLLDGETEGEETCSGEVTSNATSGDDNEVQAVRNRSEDILNFRAENGMVCRPFPVKETCKLVRSEDENGNKMINEYVREYKIGSGSYGKVALYQSCDDGKHYAIKAFHKSHLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGRPCAIGEETAKKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPDDINPQLKKLIEGLLCKDPELRMTLGDVAEHIWVIGNDGPIPEYLCWCKRKSLVTEDFDGSDVLA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0556 409 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 8 406 - -
Ssu8g0556 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Ssu8g0556 409 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Ssu8g0556 409 ProSiteProfiles Protein kinase domain profile. 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0556 409 SMART serkin_6 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0556 409 CDD STKc_LKB1_CaMKK 123 378 - -
Ssu8g0556 409 Gene3D Phosphorylase Kinase; domain 1 111 214 - -
Ssu8g0556 409 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 8 406 - -
Ssu8g0556 409 SUPERFAMILY Protein kinase-like (PK-like) 113 390 IPR011009 -
Ssu8g0556 409 Pfam Protein kinase domain 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0556 409 Gene3D Transferase(Phosphotransferase) domain 1 218 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0556 Ssu-Chr8 8990215 8994503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0556 123 385 CBL-interacting serine-threonine protein kinases AT5G35410 33.080 9.09e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Ssu8g0556 Pkinase 4.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0556 K00908 - gmx:100776013 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0556 8 8990215 8994503 Ssu8g0556 8 8990215 8994503 ECH