Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0550 ATGGAGCAAGCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCACTGATGGCGACGAACCGGTTCATCTGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAACCTGCCGTGGAAGCTGCGGCAGAGAGCGAAGGAAGAGGTGAGGAAGAAGGTGTACGTGTGTCCAGAGAAGAGTTGCGTGCACCACGACCCTTGCAGAGCCCTTGGAGACCTCACTGGGATTAAGAAGCACTACAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAATACGCAGTTCAATCTGACTGTAAAGCCCACACCAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTCGTAACGCATAGAGCCTTTTGTGACGCCATGGCGGAGCAAAGTTCACTTCCGGAAGTTTTATCAAACCTTGGAAACGAGATCTTGATGAACGCTCAAGCGCCGAGAGTAGTAATGCCTCAGGGTTTGCAATTACATGGGTTTCATCCTGAACTTGGTGGGCCAGGTCCAGAATCATACATTGGAAATTTTGCGGATGCGGACCATGAGCATAAGCTAAGGCTGCCACTATGGCTAGACCAGGCCAATCCTCAGCAGCTTAATCATCTATTCTCAGCAGGAACAACCTTGCCTGAAGCAAACAACATGTTTGGGACATCATCGTCTCAGGCACAGTGGGTGAATTACCGATACCCAGAAGCATCATTCACAAGTGCCAATAATATTTCTATGCCGCAAGGACTGAAGCTAGagcaagaagaaaacaaagggGAGTTGTCGCATAGCGTGAGCTCTTTGTACCCACAAGGATGCGCAGGTCACATGGAACCTACAAGGATCGGTGGTAACTCGGTCTTCGACAACTCTAACAGTGTGTTCGGCTTGTTGGACCCGAACATGTCAGGCACGTCCAGCAACAACCGGAACAATGTCGTTGACATTCAGAAAATGTTCAAGCAACAAGCAAATCAGGCCGAGAACTTCAACCACATGGGAGGTGGGTTTTCATTGACTGGCGCGAGGAATTTGGAGCATATAGTAATGCCTCGGATTGAAGAGTGGCAAAGTGGAGAACCAGAAATAATGGGCAAGCAACTGCAGTCAAGTTCAAATAGTGAAGACCACTTGACCAAAGACTTCATGGGTGTTGGAGATGGCTCGTTGAGCAGGCAAATGGGACCGGTCATGAACCTGCAAAACCAGTTTCGTGGACGTTACTGA 1302 0.4862 MEQADPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRAKEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDCKAHTKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMAEQSSLPEVLSNLGNEILMNAQAPRVVMPQGLQLHGFHPELGGPGPESYIGNFADADHEHKLRLPLWLDQANPQQLNHLFSAGTTLPEANNMFGTSSSQAQWVNYRYPEASFTSANNISMPQGLKLEQEENKGELSHSVSSLYPQGCAGHMEPTRIGGNSVFDNSNSVFGLLDPNMSGTSSNNRNNVVDIQKMFKQQANQAENFNHMGGGFSLTGARNLEHIVMPRIEEWQSGEPEIMGKQLQSSSNSEDHLTKDFMGVGDGSLSRQMGPVMNLQNQFRGRY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0550 433 Pfam Zinc-finger double-stranded RNA-binding 24 46 IPR022755 -
Ssu8g0550 433 ProSitePatterns Zinc finger C2H2 type domain signature. 26 46 IPR013087 -
Ssu8g0550 433 SMART c2h2final6 100 120 IPR013087 -
Ssu8g0550 433 SMART c2h2final6 65 95 IPR013087 -
Ssu8g0550 433 SMART c2h2final6 24 46 IPR013087 -
Ssu8g0550 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 46 IPR013087 -
Ssu8g0550 433 Gene3D Classic Zinc Finger 4 75 - -
Ssu8g0550 433 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 416 - -
Ssu8g0550 433 SUPERFAMILY beta-beta-alpha zinc fingers 23 120 IPR036236 -
Ssu8g0550 433 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 3 416 - -
Ssu8g0550 433 Gene3D Classic Zinc Finger 79 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0550 Ssu-Chr8 8906222 8907880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0550 5 156 IDZ Gene Family AT5G66730 84.211 6.04e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g0550 zf-C2H2_jaz 7.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0550 K25870 - gmx:100811687 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0550 8 8906222 8907880 Ssu8g0550 8 8906222 8907880 ECH
Ssu8g0550 8 8906222 8907880 Ssu3g2527 3 77812995 77815053 PCT