Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0549 ATGGAGGGAGATCGACGGGGTTCTAATTACTCTTTTCCACCTGGCTTCAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAGTTCACGCCCACTTCCTGCTTCCATTATGGCTGAAATAGATCTGTATAAATACAACCCGTGGGAGCTACCCAATAAGTCCTTGTTTGGGGAGGAAGAATGGTATTTCTTTAGCCCCAGAGACAGAAAGTACCCAAATGGGTTGAGGCCAAACAGGGCAGCAGCCTCAGGATACTGGAAGGCAACTGGAACCGACAAGCCAATTCTTTCTTCTTGTGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTGTTTTATTCAGGTCGTCCTCCTAAGGGAGCTAAGACGGACTGGATCATGAATGAATATAGATTGGTAGACACAACCACCAAATCCTCCAGGCTAAGCGGCTCCATGAGGCTGGATGACTGGGTACTATGCCGGGTTCGACATAAAGGCTACTCTCTGAAGAATTCATGTGAAAATCAAGAGAATCCTAGTGAGCTAAACTCGCCAGCAAAACTACCGAGGAGTGAAGAATACCCAACAAACATGAACTGTCGGGCTGATATGATCACTGATTATCAATACAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGGACCTATACCTCCCACTGAAAGCATGCCAAATCTGAGCTTTAAGGGCTGCAAAGGCAACAATCTAGTTTCAGTTTATGAAGATGGTTTCACTAAAGTGAATTCTCAAACGGCAATTCCTTCTTTGGACAGTTACTTCAACCCAATGACAAGAAAATCTAATGAAGACGAACAGTATGGAAATCTCATTTCTTTTAACAGGAAGTTCAACACTGACAACAAAATGGACGGATCTCCTAGCAAGATGTTGTCCAGTAGAGAACTGAACTGCTATAACCAAAACCAGTCTCAAGATGACATTTTCAACGGGAACCCGCCAGATCCTAGCATCAATTTTCAAGAGCTAAGCGAATTAGCCTTTGCAGAAAGGTACCCACAGTGA 1050 0.4352 MEGDRRGSNYSFPPGFRFHPSDEELIVHYLQNKISSRPLPASIMAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSCGSKRIGVKKALVFYSGRPPKGAKTDWIMNEYRLVDTTTKSSRLSGSMRLDDWVLCRVRHKGYSLKNSCENQENPSELNSPAKLPRSEEYPTNMNCRADMITDYQYKDYQIIASILVGGPIPPTESMPNLSFKGCKGNNLVSVYEDGFTKVNSQTAIPSLDSYFNPMTRKSNEDEQYGNLISFNRKFNTDNKMDGSPSKMLSSRELNCYNQNQSQDDIFNGNPPDPSINFQELSELAFAERYPQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0549 349 MobiDBLite consensus disorder prediction 172 194 - -
Ssu8g0549 349 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Ssu8g0549 349 PANTHER NAC TRANSCRIPTION FACTOR 56 1 319 - -
Ssu8g0549 349 MobiDBLite consensus disorder prediction 172 186 - -
Ssu8g0549 349 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
Ssu8g0549 349 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Ssu8g0549 349 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 319 - -
Ssu8g0549 349 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0549 Ssu-Chr8 8882122 8884067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0549 12 175 NAC Transcription Factor Family AT1G61110 67.442 2.07e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g0549 NAM 9.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0549 - - gmx:100817193 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0549 8 8882122 8884067 Ssu8g0549 8 8882122 8884067 ECH