Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0548 ATGTCCGTAATCGACATTCTCTTCCGCGTCGACACCATATGCCAGAAATATGACAAATACGACATCGATAAGCAGCGCGAGCTCAACGCCTATGGCGACGACGCCTTCGCTCGCCTCTATGCTGCTGTCGAATCCAGCATTCAAGCCGCTCTCAACAAATCCGAGGTTGCTTCCACGGAGAAGAACAGGGCAGCTGCCGCGGCTTTGAATGCCGAGGTTCGTCGAACCAAGGGTAGACTCATGGACGAGATTCCTAAACTGCGCAAATTGGTACACAAGAAGGTTAAAGGTCTCACAAAAGAGGATATGGCCATTCGTCAGGATCTTGTTCTGGCATTGCCCGAGAGAATCGAAGCAATACCAGATGGTATTACTGGTGCTGCTATTCAAACTGCAGGATGGACTGCTACCTCAACTCAGCCGCATATCAAGTTTGATTCACCAGAGGGACATCTTGACAGTGAGTATTTCCATCAAAGTGAAGAATCCAGTCAGTTTCGGCAAGAGTATGAGATGCGCAGGATGAAACAGGATGAAGGGCTTGATCTCATATCAGAGGGATTGGATACCTTGAAGAATCTGGCCCATGATATGAATGAGGAATTGGATCGGCAAGTTCCTTTAATGGATGAAATTGACACAAAGGTGGAGAGGGCAACAGCTGATGTGAGAAACACTAACGTAAGGCTTAAAAAAACTCTCACCGAGATAAGGTCTAGTCGAAATTTTTGCATCGACATCATTCTGCtctgtgtttttcttggaaTCGTTATGTATTTATACAAGTAA 789 0.4525 MSVIDILFRVDTICQKYDKYDIDKQRELNAYGDDAFARLYAAVESSIQAALNKSEVASTEKNRAAAAALNAEVRRTKGRLMDEIPKLRKLVHKKVKGLTKEDMAIRQDLVLALPERIEAIPDGITGAAIQTAGWTATSTQPHIKFDSPEGHLDSEYFHQSEESSQFRQEYEMRRMKQDEGLDLISEGLDTLKNLAHDMNEELDRQVPLMDEIDTKVERATADVRNTNVRLKKTLTEIRSSRNFCIDIILLCVFLGIVMYLYK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0548 262 Pfam SNARE domain 208 257 IPR000727 -
Ssu8g0548 262 SMART tSNARE_6 166 233 IPR000727 -
Ssu8g0548 262 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Ssu8g0548 262 SUPERFAMILY SNARE fusion complex 164 232 - -
Ssu8g0548 262 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu8g0548 262 PANTHER SYNTAXIN-72 1 261 - -
Ssu8g0548 262 CDD SNARE_Qc 176 232 - -
Ssu8g0548 262 PANTHER SYNTAXIN 1 261 IPR045242 -
Ssu8g0548 262 Gene3D - 171 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0548 Ssu-Chr8 8878253 8880369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0548 1 261 SNARE and Associated Proteins AT3G09740 68.441 1.14e-136 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0548 K08506 - gmx:100777251 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0548 8 8878253 8880369 Ssu8g0548 8 8878253 8880369 ECH