Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0545 ATGGAAATTGATCTGAACGATGCAGTGACCGAGGCTGAGAAGAGTGCGGCTTGCAATGGGGAGTGTGAGAAAGGCGCTGCTTGTGTTTGCTCTTTGTCCTCTCCAACTTGTTCATCTTCTGGCTCCTCTTCCGCACGTGTGTCTTCTTCTTATCTTGAGCTCTGGCACGCTTGTGCCGGCCCCCTCACTTCCCTCCCAAAGAAAGGGAATGTGGTGGTGTATTTCCCACAAGGGCACTTAGAACAAGCTGCAtctttctctcccttttcaCCAATGGAGATGCCCACTTATGATCTTCAGCCACAGATCTTTTGTAGAGTTGTCAACGTTCAGCTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGTCAGGGATGTATTTGGAGGGAAAAGAGCTTGAGGAATTGGGAGCAGATGAAGAGGGTAATGAAACAACAGCTACAAAGTCAACACCTCACATGTTTTGCAAAACGCTTACAGCCTCAGATACCAGCACTCATGGGGGGTTCTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGACCTACATGGTGTGGAGTGGAAATTTCGACATATTTACAGagGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAGAAGAATCTTGTTTCTGGAGATGCAGTTCTCTTTCTGaggGGTGAAAATGGAGAATTGAGATTGGGAATCCGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAGTTATTATCCCAGTTTCCTTTCTTCTGTGGCTAATGCTATATCCGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCAGATTTTGTTGTGCCCTACCAAAAATATGTCAAAAGCATCAAGAATCCAGTGACCATCGGGACAAGattcaaaatgaaatttgaaatggaTGAATCTCCAGAAAGAAGGTGTACTAGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGATTAATCATCAAGATAGAGTATCTCCATGGGAGATTGATCCTTCTGCGTCTCTCCCTCCCTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTGCAGGCTGCCTCACCCAGTCACCTCATCACTGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCTGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCACCATATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCTTCCTAATCTTGCTTCAACTGGAATGAGAAAGATAACTGCTGCTGAGCTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTCATGGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTTAGATCCCTGACAGGAAAGGTTGATTTGAACTTTGGTGCTTGGGGCAAACCCAATGTCAGTTGCACAAATTACAATCTGCATCAGGCAACCAACCCTACCTTTCACTCTTTAGGACCAGAATTTATTCAAACTGCATATTTTCCTTATGGTGATATCCACAAAGCTGGTCAAGGTAGCAGCATGTTGTGCTCTAAACCCACCAATTTCCAACGAGAGAATGTCCCATTTAACACTCCTTCCACTCAGCCAGGGATCTTGAGAAATGAAGTTGGACGGTCAGATGTCACAATCCCCAATGAGCAGAAGCTGCAGGACAATATTTCTGGTGGTGCTTCTTTAGGGGCAAGCGTGAGGATTCCAAATGATGACAATTTCAAGGGGAAGGTAAATGCTTGTAAACTATTTGGATTTCCCTTGTCCGGGGAAACTCCCACCCAAAATTTACAGAACTCTGCTAAAAGAAGTTGCACAAAGGTGAGCGATGATAGCAACAGAGTTATATTGTGA 2073 0.4409 MEIDLNDAVTEAEKSAACNGECEKGAACVCSLSSPTCSSSGSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPFSPMEMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELSGMYLEGKELEELGADEEGNETTATKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQSYYPSFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMKFEMDESPERRCTSGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRPGLQAASPSHLITGGSGFMDSEESVRSSKVLQGQENTGFMSPYYGCDTVTKQPEFEIRSPSLPNLASTGMRKITAAELMRVHPSSYAGFMETNRFPRVLQGQEICPFRSLTGKVDLNFGAWGKPNVSCTNYNLHQATNPTFHSLGPEFIQTAYFPYGDIHKAGQGSSMLCSKPTNFQRENVPFNTPSTQPGILRNEVGRSDVTIPNEQKLQDNISGGASLGASVRIPNDDNFKGKVNACKLFGFPLSGETPTQNLQNSAKRSCTKVSDDSNRVIL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0545 690 MobiDBLite consensus disorder prediction 414 435 - -
Ssu8g0545 690 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Ssu8g0545 690 PANTHER AUXIN RESPONSE FACTOR 9 683 - -
Ssu8g0545 690 CDD B3_DNA 163 265 IPR003340 GO:0003677
Ssu8g0545 690 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu8g0545 690 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 683 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu8g0545 690 SMART B3_2 165 267 IPR003340 GO:0003677
Ssu8g0545 690 Gene3D - 163 267 IPR015300 -
Ssu8g0545 690 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Ssu8g0545 690 Gene3D - 329 401 - -
Ssu8g0545 690 SUPERFAMILY DNA-binding pseudobarrel domain 158 278 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0545 Ssu-Chr8 8773105 8778313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0545 48 688 B3 DNA Binding Superfamily AT5G60450 58.295 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu8g0545 B3 1.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0545 - - gmx:100812909 1238.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0545 8 8773105 8778313 Ssu8g0545 8 8773105 8778313 ECH
Ssu8g0545 8 8773105 8778313 Ssu3g2531 3 77909896 77916646 PCT