Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0544 ATGAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCGGATTGAACTAGAGAGACTGTTTGGCATGGAAGGCCTTCTAAGAGATCCTAATAAGGGATGGAGAATCCTGTACACTGACAGTGAAAATGACATAATGGTTGTGGGGGATGACCCGTGGCATGAGTTCTGCGATGTGGTATCCAAGATTCATATACATACACTAGAAGAAGTGGAGAAGATGACAATTGGGATGATCAATGATGATACCCAGAGTTGTTTGGAACAGACCCCAGTGATAATGGAGGCTTCAAAGTCTTCCTCCGTGGGTCAGCCAGATTCTTCTCCAACAGTAGTTAGAATCTAG 381 0.4436 MKVHKQGSLVGRAIDLSRLSSYNDLRIELERLFGMEGLLRDPNKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIHTLEEVEKMTIGMINDDTQSCLEQTPVIMEASKSSSVGQPDSSPTVVRI 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0544 126 PANTHER AUXIN RESPONSE FACTOR 2 115 - -
Ssu8g0544 126 ProSiteProfiles PB1 domain profile. 1 80 IPR000270 GO:0005515
Ssu8g0544 126 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 115 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu8g0544 126 SUPERFAMILY CAD & PB1 domains 2 79 - -
Ssu8g0544 126 Gene3D - 1 87 - -
Ssu8g0544 126 Pfam AUX/IAA family 46 78 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0544 Ssu-Chr8 8772471 8773050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0544 2 126 B3 DNA Binding Superfamily AT5G60450 74.400 7.43e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu8g0544 AUX_IAA 4.8e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0544 - - gmx:100806870 233.417