Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0543 ATGGATTTGGTAGCCAGTTGCAAGGACAAATTGCAATATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTAAATTGGGACTTTCAAAACAGGGAAAGAAGCAGGATCTTGTTGATAGGATATTATCTATTCTCTCAGATGAACAAGTTTCGAAATTGTGGGCCAAGAAGAATGCTGTTGGAAAGGAACAGGTGGCAAAATTAGTGGATGACACATATAGAAAATTGCAGGTATCTGGGGCCATTGATCTAGCATCAAAGGGACAGGGTGCCTCGGATAGCAGTAATGTGAAAATTAAAGGTGAAATTGATGATTCCTTTCAACCAGATATGACGATTCGCTGTCTCTGTGGAACTTTATTGGATACAGAGCCATTGATCAAGTGTGAAGATACAAGATGCCATGTGTCACAGCACATCAACTGTGTTATTATTCCAGAGAACCCTATGGATGAAATCCCACAAGTTCCTAATAAATTCTATTGTGAAATATGCCGACTCAATCGGGCAGACCCGTTTTGGGATTCAGTGACACACCTTTTGTTGCCGGTGAAGTTGACCACAACCGATATTCCTGCTGAGGGAACCAACCCAGTACAGAGTGTGGAAAAAACGTTTCAACTCACTAGAGCAAACAAAGAGTTGGTATCAAAATCAGAATATGATGTtcagGCTTGGTGTATGCTTTTGAACGATAAGGTTTCATTCAGGATGCAATGGCCACAATATACAGATCTAAAGGTCAATGGTCTTCCTGTTCGTGCAATTAACAGACCTGCTGCACAGTTGCTTGGTGCTAATGGTCGTGACACTGGTCCAATTatcACACCATATATAAAGGATGGAATTAATAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTTTAGGTGTCCGTATTGTTAAAAAGCTCAGCATGTCAGAGATCCTAGACATGATTCCAAATGAGTCTGATGGTGAGCGTTTTGAAGATGCTCTTGCACGTGTCTGTTGTTGTGTTGGGGGTGGAAATGCAAATGATAATGCTGATAGTGATAGTGATTTGGAAGTGGTTTCAGATACTTTTAGCATCAATCTTCGTTGCCCAATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATGGGCTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATGAACGATCAAAGAAGTGGCAGTGCCCCATATGCCTTAAAAATTATGCTTTGGAGAATATCATTATTGACCCTTACTTCAATCGCATCACTACTATGATGAAAAATTGTGGAGAAGAGATTGCAGAGATCGAGGCGAAGCCTGATGGTTATTGGCGTGTCAAGGCTAAGAATGAAAGTGAACGCCGGGAGTTGGGGAATCTTGCTCAATGGCACCATCCTGATGGATCCCTCTCTGTTTCTACTGATGAAGTCAAGAGAATGGAAAATTTAAAGCTCAAACAGGAAGGTGTTTCAGACAGTCCTATTGGTTTAAAGCTCGGCATCAGGAAGAATAGTAATGGTGATTGGGAAGTCAGCAAACCTGAGAACACAAACACCTCTTCTGGTAACAGATTGAATGAGGATTCTGAAAATCATGAACATGTTGTTATTCCAATGAGCAGCAGTTCCACTGGAAGTGGTCGGGATGAAGATGATCCTAGCATAAATCAGGGTGGTGGTGGGCATATTGATTATTCTACCACCAATGGGATTGAGATTGATTCTGTGtttaacaataatattgatTCAGCTTATGGATATACTGTTCATAACACTTCTGCTCCGTTGGGTGATGCAGAAGTTATTATTCTTAGTGATTCAGAAGACGACAATGATTTATTGATGTCTCCTATAGTTGGGTACGGAAATAATCAAACTAATGCTGCAGTTGATGTTTACTCGGTGCCACAGCCTGGAATTATTGATCCATATACAGAAGATCAAAATCCTGGTGGAAATCCGGGCTTAGGAGTTTTTAATAATCCCAGTGAAGATGATTTTGGGGTGTCCTCCTTCTGGCCATTGCAATCTGGAACTCCGGCAGTCTCAGGATTTCAATTATTCAGTTCTGATGTGGATGTGTCAGATGCATTGGTCAATTTGCAGCATGGTGATATTAATTGCTCCTCATCACTGAATGGTTATATGTTGGCTCCAGGTGCTGCTTTGGGATCTAGCACTCTCGTACCGGGTTCCTCAGCAGGTCGACCTGACGATGATTTAAATGGTGGCTTGGTTGACAATCCACTGGCATTTCATGGAGAAGATCCCTCCCTTCAGATTTTTCTCCCTACAAAACCAGCAGAATCATCTATGCAGCATGAATCGAGAGATCATGCAGACGAGTCAAATGGTGTCTTCACTGAGGATTGGATCTCTCTTAGTCTTGGAGGTGGTGCCAGTGGCAGTAATGGTGACACTTCCACTGCAAATGTGTTGAATTCCAGACCACAAATTACATCCAGAGAAGATGCCACAGATTCTTTGACAGATGCCACTCCTTTGCTTCTTGGTATGAATGATGTTAGATCTGAGAAGACAAGTAGACAAAGATCAGATAGCCCTTTCTCATTTCCCCGCCAAAAACGTTCAAAACTGAAGAAAGTTGAGCAGCATTTTTGGTCCTCAGGAAATGGAAGATGA 2646 0.4138 MDLVASCKDKLQYFRIKELKDVLTKLGLSKQGKKQDLVDRILSILSDEQVSKLWAKKNAVGKEQVAKLVDDTYRKLQVSGAIDLASKGQGASDSSNVKIKGEIDDSFQPDMTIRCLCGTLLDTEPLIKCEDTRCHVSQHINCVIIPENPMDEIPQVPNKFYCEICRLNRADPFWDSVTHLLLPVKLTTTDIPAEGTNPVQSVEKTFQLTRANKELVSKSEYDVQAWCMLLNDKVSFRMQWPQYTDLKVNGLPVRAINRPAAQLLGANGRDTGPIITPYIKDGINKISLTGCDARIFCLGVRIVKKLSMSEILDMIPNESDGERFEDALARVCCCVGGGNANDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNERSKKWQCPICLKNYALENIIIDPYFNRITTMMKNCGEEIAEIEAKPDGYWRVKAKNESERRELGNLAQWHHPDGSLSVSTDEVKRMENLKLKQEGVSDSPIGLKLGIRKNSNGDWEVSKPENTNTSSGNRLNEDSENHEHVVIPMSSSSTGSGRDEDDPSINQGGGGHIDYSTTNGIEIDSVFNNNIDSAYGYTVHNTSAPLGDAEVIILSDSEDDNDLLMSPIVGYGNNQTNAAVDVYSVPQPGIIDPYTEDQNPGGNPGLGVFNNPSEDDFGVSSFWPLQSGTPAVSGFQLFSSDVDVSDALVNLQHGDINCSSSLNGYMLAPGAALGSSTLVPGSSAGRPDDDLNGGLVDNPLAFHGEDPSLQIFLPTKPAESSMQHESRDHADESNGVFTEDWISLSLGGGASGSNGDTSTANVLNSRPQITSREDATDSLTDATPLLLGMNDVRSEKTSRQRSDSPFSFPRQKRSKLKKVEQHFWSSGNGR 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0543 881 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Ssu8g0543 881 MobiDBLite consensus disorder prediction 799 881 - -
Ssu8g0543 881 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Ssu8g0543 881 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Ssu8g0543 881 Gene3D SAP domain 1 62 IPR036361 -
Ssu8g0543 881 SUPERFAMILY SAP domain 1 64 IPR036361 -
Ssu8g0543 881 SMART sap_9 11 45 IPR003034 -
Ssu8g0543 881 MobiDBLite consensus disorder prediction 799 829 - -
Ssu8g0543 881 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Ssu8g0543 881 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Ssu8g0543 881 MobiDBLite consensus disorder prediction 511 526 - -
Ssu8g0543 881 Pfam SAP domain 13 42 IPR003034 -
Ssu8g0543 881 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 815 - -
Ssu8g0543 881 MobiDBLite consensus disorder prediction 536 552 - -
Ssu8g0543 881 MobiDBLite consensus disorder prediction 496 564 - -
Ssu8g0543 881 SMART PHD_3 114 166 IPR001965 -
Ssu8g0543 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Ssu8g0543 881 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 815 - -
Ssu8g0543 881 MobiDBLite consensus disorder prediction 845 871 - -
Ssu8g0543 881 MobiDBLite consensus disorder prediction 730 751 - -
Ssu8g0543 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 447 IPR013083 -
Ssu8g0543 881 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0543 Ssu-Chr8 8756976 8770210 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0543 - K22403 gmx:100803144 1491.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0543 8 8756976 8770210 Ssu8g0543 8 8756976 8770210 ECH
Ssu8g0543 8 8756976 8770210 Ssu3g2534 3 77934995 77950933 PCT