Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0537 atggagagtgACACAAACACCCCAACTTCCTCTCCCACATTTTCACACTCTACAAATTCCCCTTCTTCCCCTCCCCAAGTTGTCATGAGCCCTTGTGCTGCTTGCAAGATTCTGAGGCGAAGATGTGCTGAGAAATGTGTGTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCACTGCCCACCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGTCTCAAAGAGCTGACGCAGTGGCCAGCATGGTTTATGAGGCTGGTGCAAGAATAAGAGACCCAGTATACGGCAGTGCAGGTGCAATTTGCCAGCTCCAAAAGCAAGTCAATGAACTTCAAGCACAATTAGCAAAGGCACAAGCTGAGCTTGTGAACATGCAATTGCAACAAGCCAATCTTGTGGCTCTAATTTGCATGGAAATGGCACAAACTCCACAGGAATCACCACAACAATCCGTGGACAACTTCATTTCAAGTCCTTCCCACAGCAGCGGCTATCAAAACAATCTCAATTTCTTTGAGGAGAACACCAACCTAAACTCTTTGTGGGAACCTCTTTGGACATGA 591 0.4636 MESDTNTPTSSPTFSHSTNSPSSPPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAELVNMQLQQANLVALICMEMAQTPQESPQQSVDNFISSPSHSSGYQNNLNFFEENTNLNSLWEPLWT 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0537 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 16 193 - -
Ssu8g0537 196 MobiDBLite consensus disorder prediction 1 27 - -
Ssu8g0537 196 Pfam Lateral organ boundaries (LOB) domain 31 128 IPR004883 -
Ssu8g0537 196 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
Ssu8g0537 196 Coils Coil 110 137 - -
Ssu8g0537 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0537 Ssu-Chr8 8671218 8672946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0537 27 196 AS2 family AT2G28500 68.280 3.98e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu8g0537 LOB 1.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0537 - - gmx:100819336 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0537 8 8671218 8672946 Ssu8g0537 8 8671218 8672946 ECH
Ssu8g0537 8 8671218 8672946 Ssu3g2544 3 78110476 78112258 ECH
Ssu8g0537 8 8671218 8672946 Ssu3g2544 3 78110476 78112258 PCT