Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0532 ATGTTTCCCGAGAAAATGGAGCAGTTCATCGATAACTTGCCGGCGATGGATCTGATGCGATCCGAGAAGATGACCTTCGTTCAGCTCATCATCCCCGTCGAGTCTGCTCACCGCGCCATCTCCTATTTAGGCGAACTCGGCCTCCTCCAATTCCGCGACTTAAATGCTGATAAAAGCCCCTTCCAGAGAACATTTGTTAATCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGGTTCTTCAAGGATCAAATCAGTAAAGCTGGCCTAATGTCTTCTTCTCGTACTGTAATGCAACCAGATATTGACTTAGAGGATTTAGAgATACAACTTGCTGAACATGAACATGAGCTAATTGAAATGAACTCTAATAGTGACAAACTTCGACAATCATATAATGAACTCCTGGAATTCAAGATTGTATTACAAAAGGCATGTGGTTTTCTTGTTTCAAGTCATAGCCTTCCGGTTTCAGATGAAAGAGAACTACAAGAgaacatatattcaaatgatGCCTATGTTAAGACAGCATCTTTGCTTGAACAGGAAATGAGGCCTCAGTCATCAAATTCATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAGGTTCTTAGGTTTGAAAGGATGTTGTTTCGTGCTACAAGAGGCAATATGCTTTTCAATCAGGCACCAGCTGATGTACAAATCATGGATCCTGTTTCAACTGAGATGatTGAAAAAACAGTGTTCGTTGTGTTTTTCTCTGGGGAACAGGCAAGAACAAAGATTCTGAAAATTTGTGAGGCATTTGGTGCAAATTGTTATCCTGTTCCTGAAGATATTAGCAAGCAAAGGCAAATATCTAGAGAGGTTTCATCACGTCTTACAGACTTAGAGGCAACTCTGGAAGCTGGGATTAGGCACCGGAACAAGGCTCTAGCTTCTGTTGCAGACCATCTAGCAAAATGGATGAACATGGTAAGAAGAGAGAAGGCTGTGTATGATACGCTGAACATGTTAAATTTTGATGTCACTAAAAAATGCCTTGTTGGAGAGGGATGGTGCCCTCTGTTTGCAAAAACacagaTGCAGGAGGCACTGCAACGTGCAACTTTTGATAGCAATTCTCAAGTTGGCATAATCTTCCATCCAATGGATGCAGTGGAATCACCACCTACATATTTTAGGACCAACACTTTCACAAGTCCATATCAAGAAATTGTTGATGCATATGGTGTTGCAAGATACCAAGAAGCAAATCCTGCAGTTTACACAACTATTATATTCCCTTTCCTATTTGCTGTGATGTTTGGGGACTGGGGTCATGGAATTTGCCTTTTGCTAGGAGCATTGGTTCTTATAGCTCGTGAAAACAAGCTCAGCTCACAGAAACTTGGAAGCTTTATGGAGATGCTATTTGGTGGGCGCTATGTGCTTCTTTTAATGGCAATATTTTCAATCTATTGTGGCTTAATCTACAATGAATTCTTTTCTGTTCCTTTTCACATATTTGGTGCATCGGCTTACAAATGTCGTGATAGTTCATGCAGGGATGCACATACTATTGGCTTAGTCAAATACCAAGATCCATACCCGTTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGTTCAGAATTATCTTTCCTGAACTCTATGAAGATGAAGATGTCCATTCTGTTTGGTGTGGCACATATGAACTTAGGaattatattaagttattttaatgcTCGTTTCTTTGGAAGCTCATTGGATATAAGGTACCAGTTCGTGCCACAGATGATTTTCCTTAACAGTCTATTTGGGTATCTTTCCCTTCTCATTGTTGTCAAGTGGTGTACTGGCTCTCAAGCAGACCTTTATCATGTAATGATATACATGTTTTTAAGCCCCATGGACAATCTTGGCGAGAATCAGTTGTTCTGGGGCCAAAGACCACTTCAAATTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGCTTTATACTGAGAGATTTCAAGGTCGTAGTTATGGTATACTGAATACCTCTGAGGTGGATCTTGAGGCTGAGCCTGATTCTGCCAGACAACATCATCATGAAGAATTCAATTTCAGTGAGGTCTTTGTTCACCAAATGATCCACGCCATTGAATTTGTTCTAGGTTCAGTTTCTAATACAGCATCATATCTTCGTCTCTGGGCATTAAGTTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGGGTATGACAATCTTGTCATTCGGTTGGTAGGGCTAACTGTTTTTGCCTTTGCAACTGCCTTTATACTACTAATGATGGAGAGTCTCAGTGCTTTTCTTCATGCCCTGCGGCTTCACTGGgtagaatttcaaaataaattctacCATGGTGATGGCTACAAGTTCAGGCCTTTTTCATTTGCCTCCTTAACAGAGGATGACGATTGA 2478 0.3999 MFPEKMEQFIDNLPAMDLMRSEKMTFVQLIIPVESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGLMSSSRTVMQPDIDLEDLEIQLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACGFLVSSHSLPVSDERELQENIYSNDAYVKTASLLEQEMRPQSSNSSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIMDPVSTEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQISREVSSRLTDLEATLEAGIRHRNKALASVADHLAKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPLFAKTQMQEALQRATFDSNSQVGIIFHPMDAVESPPTYFRTNTFTSPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGALVLIARENKLSSQKLGSFMEMLFGGRYVLLLMAIFSIYCGLIYNEFFSVPFHIFGASAYKCRDSSCRDAHTIGLVKYQDPYPFGVDPSWRGSRSELSFLNSMKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRYQFVPQMIFLNSLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPMDNLGENQLFWGQRPLQIVLLLLAVIAVPWMLFPKPFILKKLYTERFQGRSYGILNTSEVDLEAEPDSARQHHHEEFNFSEVFVHQMIHAIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLTVFAFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLTEDDD 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0532 825 Pfam V-type ATPase 116kDa subunit family 42 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
Ssu8g0532 825 Coils Coil 105 132 - -
Ssu8g0532 825 PANTHER VACUOLAR PROTON ATPASE A1 10 825 - -
Ssu8g0532 825 PANTHER VACUOLAR PROTON ATPASES 10 825 IPR002490 GO:0033179|GO:0046961|GO:1902600
Ssu8g0532 825 PIRSF ATP6V0A1 14 825 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0532 Ssu-Chr8 8536473 8547978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0532 6 818 Primary Pumps ATPases(2) AT2G28520 80.368 0.0 1367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0532 K02154 - gmx:100793301 1569.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0532 8 8536473 8547978 Ssu8g0532 8 8536473 8547978 ECH