Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0526 ATGTTGGATCTTAATCTGAATGCCGATTCGACTCAGAACGACGACTCGTTGGTGCTGCTGGACAAGTTTCCCGAAGCTTCGTCGGGAACTTCGAATTCCTCCGTGGTGAATGCGGAGGGGTCGAGCAACGAGGACTCGTGCTCCACACGCGCCGGCGACGTGTTCACCTTCAATTTCGGAATCCTTAAGGTGGAAGGCGCGAAGGACGCCGTGGCCGCGGCCGCGACGAAGGAGCTGTTTCCGGTGAGTACGGAGAATTGGCAGGGTCAGAGTTCGACGTCGTCGTTTCAGGCTAGGAAGAGTTCGATGGATCTCTCGCTGGATCGTCGTCGAGGCGAAAACGACGAGGTGATGAAGGTTCAGCAACAACCACAGGTGAAGAAGAGTAGGAGAGGTCCAAGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGAAGGACCGGAAGATGGGAATCACATATCTGGGATTGCGGGAaacaagtctatttggGTGGATTCGACACCGCTCATGCCGCTGCCAGggCCTATGATCGAGCTGCTATTAAGTTCAGGGGGCTTGATGCTGACATCAATTTCAATCTCGTTGATTATGAGGAGGATCTAACACAGATGAAGAATCTGTCCAAGGAGGAGTTCGTTCACATACTCCGCCGCCACAGTACCGGTTTCTCGAGGGGGAGTTCGAAATACCGGGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGAGAGGCAGTGACTAACTTTGAGCCAAGTACATATGAGAGTGAGATGAAACCTGAAGCTATTAATGAAGTTGGCAGTCACAATCTTGACCTCAATCTGGGCATAGCGACCCCAGGACACGGTCCCAAAGAAAACAGGGGGCATCTTCAGTTCCAGCCCGTCCCTTACAACACGTATCCCGGAAGAAGTTCAAGGGTGGAGACTAATGTTAATTCGGTTATTGGTGATCCGTCTTTGAAAAAGCTGGTGGTAACTGAAGAGCGTCCTTCTGTATGGAATGCCACGTATTCCAGTTTCTTTCCCAATCTGGAAAGAGCAGAGAGAATTGGCATAGATCCTTCGAAAGGAGTCCCCAACTGGGCGTGGCAAACGCATGGCCAGGTTACTGCCACCTCAGTACCACCATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCCACTGCCATCTTTCCAACAAAATCTATGAACTCAATTCCGCAGAGCCTCTATTATGAGGTGAAGTCCCCGCAGGCACCATCCTAG 1335 0.5041 MLDLNLNADSTQNDDSLVLLDKFPEASSGTSNSSVVNAEGSSNEDSCSTRAGDVFTFNFGILKVEGAKDAVAAAATKELFPVSTENWQGQSSTSSFQARKSSMDLSLDRRRGENDEVMKVQQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDLTQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYESEMKPEAINEVGSHNLDLNLGIATPGHGPKENRGHLQFQPVPYNTYPGRSSRVETNVNSVIGDPSLKKLVVTEERPSVWNATYSSFFPNLERAERIGIDPSKGVPNWAWQTHGQVTATSVPPFSTAASSGFSISATFPSTAIFPTKSMNSIPQSLYYEVKSPQAPS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0526 444 ProSiteProfiles AP2/ERF domain profile. 139 195 IPR001471 GO:0003700|GO:0006355
Ssu8g0526 444 CDD AP2 230 275 IPR001471 GO:0003700|GO:0006355
Ssu8g0526 444 SMART rav1_2 139 201 IPR001471 GO:0003700|GO:0006355
Ssu8g0526 444 SMART rav1_2 231 279 IPR001471 GO:0003700|GO:0006355
Ssu8g0526 444 MobiDBLite consensus disorder prediction 87 140 - -
Ssu8g0526 444 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE2 1 435 - -
Ssu8g0526 444 SUPERFAMILY DNA-binding domain 138 195 IPR016177 GO:0003677
Ssu8g0526 444 MobiDBLite consensus disorder prediction 103 117 - -
Ssu8g0526 444 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 435 - -
Ssu8g0526 444 MobiDBLite consensus disorder prediction 26 47 - -
Ssu8g0526 444 CDD AP2 139 194 IPR001471 GO:0003700|GO:0006355
Ssu8g0526 444 SUPERFAMILY DNA-binding domain 230 274 IPR016177 GO:0003677
Ssu8g0526 444 MobiDBLite consensus disorder prediction 87 102 - -
Ssu8g0526 444 Pfam AP2 domain 139 187 IPR001471 GO:0003700|GO:0006355
Ssu8g0526 444 Gene3D AP2/ERF domain 230 274 IPR036955 GO:0003700|GO:0006355
Ssu8g0526 444 Gene3D AP2/ERF domain 138 197 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0526 Ssu-Chr8 8413433 8416737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0526 1 437 AP2-EREBP Transcription Factor Family AT5G60120 47.917 5.34e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu8g0526 AP2 2.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0526 K09284 - gmx:100777102 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0526 8 8413433 8416737 Ssu8g0526 8 8413433 8416737 ECH