Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0521 ATGGGTTGCTTTCGTTGCACAGGCAAATCAAGCAAAAAATCGAACAACAACATTAATCACAGCGAGAAACACAGCAATAACACTGCTACTGATAAGGTCAAAGTTGATTTGAATGTGAATGGTAAAAGAGAAGATAATAATCCTAAGCCTGATCAGCTGTCTCTGGACGTgaagaatttgaatttaaaagagGTTTCCAATGAAGGAAAAGTTAACGGTTACAAGGCACAGACATTTACTTTTGATGAGCTTGCAGCTGCAACAGGGAATTTTAGGCCAGATTGCTTTCTGGGTGAAGGAGGGTTTGGCAAGGTTTATAAGGGgcacataaacaaaataaatcagGTCGTAGCAATAAAGCAACTAGACCCTCATGGGCTTCAAGGAATTAGGGAATTTGTTGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTAATTTGGTCAAGTTAATTGGGTTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCGTTGGGATCTTTGGAGAATCATTTGCAGGATCTTCCGCGTGGTAGAAAACCACttgattggaatacaagaatgAAAATAGCAGCTGGTGCAGCTAGAGGTTTAGAGTATCTGCATGATAAAATGAAGCCTCCTGTCATATACCGTGACTTGAAATGCTCCAATATTCTGTTAGGCGAGGGATATCATCCCAAGTTATCTGATTTTGGCTTGGCAAAAGTAGGCCCAAGTGGTGATAAGACGCACGTATCGACAAGAGTTATGGGAACATATGGGTATTGTGCCCCAGATTATGCAATGACGGGTCAATTGACATTCAAGTCTGATATTTATAGCTTTGGAGTTGTTCTTTTGGAGATCATCACAGGCAGGAAGGCCATCGACCGCACAAAAGCTGCTAAAGAACAAAATCTAGTTGCGTGGGCAAGGCCTTTATTCAAAGACCGGAAAAGATTCTGTGAGATGGTTGACCCATTGCTTGAAGGTCAGTATCCAGTGAGAGGTTTGTACCAAGCTCTTGCTATTGCTGCCATGTGTGTTCAAGAACAGCCTAATATGCGGCCTGTCATAGCTGATGTGGTTACAGCTCTAAATTACCTCGCATCCCAAAAATACGATCCCCAAATTCATTCAGTCCAAAGCTCTAGAAAGGGTGTATCTTCTCCAAAAGAGAGAAGCAATGGTCATAGACGTACTGTTAGTCATGGTTCTGATCGAAGAGCGAGAAGCGATGGTCATAGACAAACTGCCAGTAATGGTTCTGCGACAGAATTTGATCCCCAAATTCATTCAATGCAAAGCTCTAGGAAAGGTGCGTCTTCTCCAAGAGTGAGAAGTAATGGTCATAGACGTATTACTAGGAGTGATTCGGAGACAGAAAGCTCTAGAAGTATCTTCTCCACGAGTGAGAAGTGA 1419 0.4116 MGCFRCTGKSSKKSNNNINHSEKHSNNTATDKVKVDLNVNGKREDNNPKPDQLSLDVKNLNLKEVSNEGKVNGYKAQTFTFDELAAATGNFRPDCFLGEGGFGKVYKGHINKINQVVAIKQLDPHGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLENHLQDLPRGRKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAIDRTKAAKEQNLVAWARPLFKDRKRFCEMVDPLLEGQYPVRGLYQALAIAAMCVQEQPNMRPVIADVVTALNYLASQKYDPQIHSVQSSRKGVSSPKERSNGHRRTVSHGSDRRARSDGHRQTASNGSATEFDPQIHSMQSSRKGASSPRVRSNGHRRITRSDSETESSRSIFSTSEK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0521 472 ProSiteProfiles Protein kinase domain profile. 91 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0521 472 Pfam Protein tyrosine and serine/threonine kinase 97 363 IPR001245 GO:0004672|GO:0006468
Ssu8g0521 472 SMART serkin_6 91 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0521 472 MobiDBLite consensus disorder prediction 378 472 - -
Ssu8g0521 472 MobiDBLite consensus disorder prediction 8 24 - -
Ssu8g0521 472 SUPERFAMILY Protein kinase-like (PK-like) 77 383 IPR011009 -
Ssu8g0521 472 MobiDBLite consensus disorder prediction 415 443 - -
Ssu8g0521 472 CDD STKc_IRAK 97 366 - -
Ssu8g0521 472 MobiDBLite consensus disorder prediction 1 33 - -
Ssu8g0521 472 Gene3D Phosphorylase Kinase; domain 1 61 167 - -
Ssu8g0521 472 PANTHER OS07G0668900 PROTEIN 1 400 - -
Ssu8g0521 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Ssu8g0521 472 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 400 - -
Ssu8g0521 472 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Ssu8g0521 472 Gene3D Transferase(Phosphotransferase) domain 1 168 388 - -
Ssu8g0521 472 MobiDBLite consensus disorder prediction 390 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0521 Ssu-Chr8 8228487 8231766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0521 1 411 Glycoside Hydrolase AT3G07070 52.619 4.42e-147 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu8g0521 PK_Tyr_Ser-Thr 3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0521 - - gmx:100794680 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0521 8 8228487 8231766 Ssu8g0521 8 8228487 8231766 ECH
Ssu8g0521 8 8228487 8231766 Ssu3g2562 3 78572876 78577026 ECH
Ssu8g0521 8 8228487 8231766 Ssu3g2562 3 78572876 78577026 PCT