Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0518 ATGGAGCAATCAGAAAAATCGCCGAAGAAAATATCATCACTGAGATCATCATTTCCGAGAGACCCACGTGGCTCACTCGAAGTGTTCAACCCAACAACCACTTCAACAAACTCGCACGTGCGTTCCCAGCCCCTTTGGAAATCGTGGGCGGAGTCGGAAGAAGCGCGCAACCGCTTCTCCGATGAGATCACCGCCACTTCCTGGATGGCGATCAATCCGTCATCTCCGGCGGCCGGAGAATGCGGCGCAGCGGCGCAGAGAGCCGCCGAATGGGGGTTGGTGCTCCGGACAGACACCGAGACCGGCAAGCCGCAGGGCGTGGCGGTGAGGAACTCCGGCGGCGAGGAACCGAACGTCAAACTCGCAGccgcttcttcttcttccagaAAGAACTCTCAGAACTCCGCCAGAACCTCCGGCGACTCTTCCGACGGCGGCGGGGGGATTCCGAGAATTTCGGAGGACGTGATGGGCGCTCTGTCGGCTTTCCAACAAACTTTCGTGGTTTCGGACGCTACCAAACCTGATTACCCGATCCTGTATGCCAGTGCCGGGTTCTTTAAAATGACGGGTTATACATCCAAGGAAGTTATTGGCAGAAACTGTCGGTTTTTACAGGGTGCAGACACGGATCCCAATGACGTGGCAAAGATAAAGGAAACATTGCAAGCGGGGAAAATTTACTGCGGAAGGCTTCTAAATTACAAGAAGGATGGGACACCTTTCTGGAACCTTCTCACTATTTCACCCATTAAGGATGAAGATGGCAAAGTGCTCAAATTTATCGGAATGCAAGTGGAGGTTAGCAAGCATACGGAGGGGTCCAAGGAGAAGATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATATGATGCCCGCCAGAAAGAGAAGGCTACAAGTTCAGTGTCTGAGTTGTTAGAGGCCATGAAGCGCCCCCGAGCATTAAGTGAATCGGCTAGCCGTCCCTCCATCAGAAAATCAGGGTGTGCTGACGAAGAAGTAGCACTagcagaagaagaaaaagggaaagaagaaaaaacatcaagaaGAAAATCTGAGAGTGTGGCTTCATTTAGACGGAAATCAGAAGGAGGAAATAGAATTTCAATGCAACGAATCATTGAGCTGCCTGAAAATAAACAGAAAAGCTCGCAGCGCCGTTCTTTCATGGgGTTCAGGAGGAAAAGTCAGTCCAATGATGAAAGCATGGATAATGAAGATATTGAGGACGTCAGCTCTGAGAGTGAGGATGACGAGAGGCCTGATAGTATTGAGCTGGATGACAAAGAAAAGCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAGAACTTTGTCATTACTGATCCAAGGCTTCCTGACAATCCTATAATCTTTGCATCGGATAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGGAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACCGTGAGAAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACCGTACAATTGATTAATTATACGAAGAGTGGGAAAAAGTTCTGGAACCTGTTTCATTTGCAGCCTATGCGTGATCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAACTGCATCGCAGAAGATAATGCAAAGGAGGGAGAACAATTGGTCAAACAAACTGCAGAAAATGTTGATGAGGCAGTGAGAGATCTTCCGGATGCTAATATGAAACCAGACGATTTATGGATAAATCATTCAAAAACAGTTCACCCAAAACCTCATAGGAAGGATGACCCTGCATGGAGAGCTATCCAGAAGGTCCTAGAAAGTGGAGAACAGATAGGGTTAAAGCACTTTAGGCCAATTAAACCTTTGGGGTCAGGAGATACTGGCAGTGTGCATCTGGTGGAGCTTCGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCGCAGAGAGAGAAATCCTTGACAAGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAAACACACGTTTGTTTGATAACTGATTATTGTCCTGGGGGAGAGTTGTTCCTGCTTCTTGACCGGCAGCCAAGTAAGGTTCTCAAGGAAGACGCAGTGAGATTTTATGCCGCTGAGGTAGTGATTGCATTGGAGTACCTTCATTGCCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTGTTAATCCAGAGCAGTGGGCATGTATCCCTAACAGATTTTGATTTGTCATGTTTAACACCTAGCAAGCCACAGCTTATAATTCCAGCTACcaatgaaaagaagaagaagaagaagaaacaacagAAAAGTCGGCAGGTTCCATTGTTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCGGGTCATACTAGTGCTGTGGATTGGTGGGCtctagGTGTTCTAATATATGAAATGCTTTATGGGTATACACCATTCCGGGGGAAGACAAGACAAAAAACATTTGCAAACATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGGTAAGTCTCCAGGCAAGGCAGCTAATTTACTGGTTGTTGCACAGAGATCCCAAAGACAGATTGGGTTCACGTGAAGGAGCAAATGAAATTAAACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTATCTTAACGGGaactgaagaagaaaaagaagccaAAGATATAGATCCCCTGCTAGAGGATCTACAGACAAATGTTTTCTGA 2931 0.4442 MEQSEKSPKKISSLRSSFPRDPRGSLEVFNPTTTSTNSHVRSQPLWKSWAESEEARNRFSDEITATSWMAINPSSPAAGECGAAAQRAAEWGLVLRTDTETGKPQGVAVRNSGGEEPNVKLAAASSSSRKNSQNSARTSGDSSDGGGGIPRISEDVMGALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPNDVAKIKETLQAGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMQVEVSKHTEGSKEKMLRPNGLPESLIRYDARQKEKATSSVSELLEAMKRPRALSESASRPSIRKSGCADEEVALAEEEKGKEEKTSRRKSESVASFRRKSEGGNRISMQRIIELPENKQKSSQRRSFMGFRRKSQSNDESMDNEDIEDVSSESEDDERPDSIELDDKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAEDNAKEGEQLVKQTAENVDEAVRDLPDANMKPDDLWINHSKTVHPKPHRKDDPAWRAIQKVLESGEQIGLKHFRPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPSKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSSGHVSLTDFDLSCLTPSKPQLIIPATNEKKKKKKKQQKSRQVPLFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGVLIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQARQLIYWLLHRDPKDRLGSREGANEIKRHPFFRGVNWALVRCMKPPELDAPILTGTEEEKEAKDIDPLLEDLQTNVF 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0518 976 SMART pac_2 229 271 IPR001610 -
Ssu8g0518 976 SMART pac_2 516 558 IPR001610 -
Ssu8g0518 976 PANTHER PHOTOTROPIN-1 105 976 - -
Ssu8g0518 976 Gene3D Transferase(Phosphotransferase) domain 1 724 944 - -
Ssu8g0518 976 ProSiteProfiles Protein kinase domain profile. 640 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0518 976 ProSiteProfiles PAS repeat profile. 152 223 IPR000014 -
Ssu8g0518 976 ProSitePatterns Protein kinases ATP-binding region signature. 646 669 IPR017441 GO:0005524
Ssu8g0518 976 TIGRFAM sensory_box: PAS domain S-box protein 179 272 IPR000014 -
Ssu8g0518 976 TIGRFAM sensory_box: PAS domain S-box protein 464 554 IPR000014 -
Ssu8g0518 976 SMART serkin_6 640 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0518 976 SMART pas_2 441 510 IPR000014 -
Ssu8g0518 976 SMART pas_2 154 223 IPR000014 -
Ssu8g0518 976 MobiDBLite consensus disorder prediction 313 439 - -
Ssu8g0518 976 PANTHER FLIPPASE KINASE 1-RELATED 105 976 - -
Ssu8g0518 976 MobiDBLite consensus disorder prediction 97 151 - -
Ssu8g0518 976 SUPERFAMILY PYP-like sensor domain (PAS domain) 455 554 IPR035965 -
Ssu8g0518 976 Pfam Protein kinase domain 642 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0518 976 CDD PAS 179 268 IPR000014 -
Ssu8g0518 976 ProSiteProfiles PAC domain profile. 513 567 IPR000700 -
Ssu8g0518 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 761 773 IPR008271 GO:0004672|GO:0006468
Ssu8g0518 976 Gene3D Phosphorylase Kinase; domain 1 639 723 - -
Ssu8g0518 976 ProSiteProfiles PAC domain profile. 226 280 IPR000700 -
Ssu8g0518 976 MobiDBLite consensus disorder prediction 328 362 - -
Ssu8g0518 976 Gene3D PAS domain 166 323 - -
Ssu8g0518 976 Gene3D PAS domain 428 592 - -
Ssu8g0518 976 MobiDBLite consensus disorder prediction 121 142 - -
Ssu8g0518 976 MobiDBLite consensus disorder prediction 27 44 - -
Ssu8g0518 976 MobiDBLite consensus disorder prediction 405 425 - -
Ssu8g0518 976 CDD PAS 454 554 IPR000014 -
Ssu8g0518 976 Pfam PAS domain 173 269 IPR000014 -
Ssu8g0518 976 Pfam PAS domain 462 554 IPR000014 -
Ssu8g0518 976 SUPERFAMILY PYP-like sensor domain (PAS domain) 173 265 IPR035965 -
Ssu8g0518 976 CDD STKc_phototropin_like 638 950 - -
Ssu8g0518 976 SUPERFAMILY Protein kinase-like (PK-like) 623 951 IPR011009 -
Ssu8g0518 976 ProSiteProfiles PAS repeat profile. 439 512 IPR000014 -
Ssu8g0518 976 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0518 Ssu-Chr8 8188561 8204506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0518 1 976 AGC Kinase Gene Family AT3G45780 69.931 0.0 1363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu8g0518 Pkinase 3.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0518 K20715 - gmx:100776796 1697.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0518 8 8188561 8204506 Ssu8g0518 8 8188561 8204506 ECH
Ssu8g0518 8 8188561 8204506 Ssu3g2564 3 78587444 78602071 PCT