Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0511 ATGTATGCACAGCCTAGCAGCACCGTATCACCCCTTCCCTCTCCTTCACCACTCTTCCCAGACCTCACCGAATTCGAGACCCTCTCCCAACTCAACAACTCGGACACGAGTTAttactacaacaacaacaacagtaatTGTAGCAGTGGCTATAGCAGTTACGGTGGGTCACCCTCACCCACTTCTGTGGCCAGTCCCAACTTGATGCAGAGGAGTGTTAGCAGCCATTCCTTTCACTACAACAATGGGACCCACCACCCTCTCTCTGCTCTCTTCGCCGAGCTGCTCGACTCCGACGACACTTCGGTTAGGAGAGTTTGCAGTACCGGTGATCTCCAGAGGATTAATGGAATGCAACATAATCATCACTCGGATAGTCCGTTATCAAGCGAAAGTAGTATGATCATAGAAGGGATGAGCAGAGCCTGTCCATATAGCCCGGAGGAGAAGAAGGCGAGAATTGAGAGATACAGAAGCAAGAGGAACCAGAGGAACTTCAACAAGAAAATTAAGTATGCTTGCAGGAAGACATTGGCAGACAGCAGGCCACGCATCAGAGGACGGTTTGCGAGGAATGACGAAATGGACAAGAACAGTACGGTTCAGTGGAGCCAAATTGGTGGTGGAGAGGAAGAGGATGAGGAAGATGAGAATTGGGTCACTATCTTAGATTCCTTAGTTGCTGCAAATTTTGCTCAGGAGTCTCAAGGCAGTTCCTCCTTTGGATTACTCTATTAG 738 0.477 MYAQPSSTVSPLPSPSPLFPDLTEFETLSQLNNSDTSYYYNNNNSNCSSGYSSYGGSPSPTSVASPNLMQRSVSSHSFHYNNGTHHPLSALFAELLDSDDTSVRRVCSTGDLQRINGMQHNHHSDSPLSSESSMIIEGMSRACPYSPEEKKARIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEMDKNSTVQWSQIGGGEEEDEEDENWVTILDSLVAANFAQESQGSSSFGLLY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0511 245 PANTHER CCT MOTIF PROTEIN 10 245 - -
Ssu8g0511 245 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 10 245 IPR045281 GO:0009909
Ssu8g0511 245 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Ssu8g0511 245 Pfam CCT motif 151 192 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0511 Ssu-Chr8 8052863 8055421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0511 138 209 C2C2-CO-like Transcription Factor Family AT5G24930 47.945 5.64e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu8g0511 CCT 2.7e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0511 - - gmx:102661609 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0511 8 8052863 8055421 Ssu8g0511 8 8052863 8055421 ECH
Ssu8g0511 8 8052863 8055421 Ssu3g2568 3 78660255 78662389 PCT