Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0507 ATGCAGAAAGATCCTGTCATGAAGGAATACTCAGTCAATGTGACCTCAGACAACCTTGTTATCACCTTTAAACCTTCACAAAATTCCACTGCTTTTGTGAGTGCCATTGAGGTTGTTTCTGCCCCTGATGACCTCATTGGTGATGAGGCTTCCACCTTAGATCCACCAGCAGCCTATTCTGGGTTGGTGACACAGGCACTGGAGACAGTTTGGAGGGTTAACATGGGTGGTCCTATTGTGACCCCTATAAATGACACGCTTCAAAGAACTTGGATCCCAGATCAAAGCTTCCTTTTGGAACCCAACCTTGCCTCATTTGTTTCTAATATTGATGCTGTTAAGTATGAGAATGGTGGGTCAACAACAGAAAACACTGCTCCGCCTACTGTTTACGGTACTCTCACACAGATGAACTCAACCTATGATCCCCGTAGTAATTTCAATGTGACATGGCAGTTTGATGTGAATCCAGGGTTTCAGTACCTTGTTAGATTTCACTTCTGTGATGTAGTCAGTAAAGGTCTCAATGAACTCTACTTCAATGTTTATATTGATTCCAAGCTGGCTGCCGCGAATGTTGATCTCAGTGTTTATAGTAATAATGCTTTGGGTGTTCCATATCATAAGGATTTGGTTACAGCCTTGGCCGTCAACAATACAATTCGTGTAAGTATTGGCCCTTCTGATTTAAATAAGGACTTCCCTAATGCCATTTTGAATGGACTGGAGATCATGAAAATGAACAATTCAATGGGCAGTCTTTTCTCAGGAGCAGCATCTGTGGATATGACTTCTGGTTCAAGTTCTAAGAAAATTGGCGTGATTGTGGGTGTGAGTGTTGGGGTAGTATGTGCTGTTGTCTTGGCTGGACTTTTCTTTTTACTATGCAGGAAAACAAAGTTGGCACGTCAAAGGCAGTCAAAGACATGGGTTCCTTTATCCATCAATGATGGAACTACTTCCCATACCATGGGAAGCAAATATTCTAATGGCACAACACTGAGTGCTGCTTCAAACTTTGAGTACCGTGTCCCTTTTGTGGCAGTTCAGGAGGCTACAAACAATTTTGATGAGAGTTGGGTTATTGGGATAGGTGGTTTTGGTAAAGTGTACAAGGGAGAGTTGAGTGATGGCACAAAAGTGGCAGTTAAGAGGGGGAATCCACTGTCCCAGCAGGGGCTTGCAGAATTCCAAACTGAAATTGAAATGCTGTCTCAGTTCCGCCATCGCCATCTGGTGTCTTTGATTGGTTATTGTGATGAAAGGAATGAAATGATCTTGATATATGAATATATGGAGAAGGGAACTCTCAAGAGTCATTTATATGGTTCAGGTCTGCCGAGCTTAAGCTGGAAGGAGAGGCTTGAGATATGCATTGGAGCAGCTAGAGGACTTCATTACCTTCACACTGGCTATGCTAAAGCCGTTATTCACCGTGATGTGAAGTCTGCAAATATCCTACTTGATGAGAACCTAATGGCTAAAGTTGCTGATTTCGGACTATCAAAGACGGGGCCTGAAATTGACCAGACACATGTGAGCACGGCTGTCAAAGGGAGTTTTGGGTACCTTGATCCGGAGTATTTCAGGAGGCAACAACTAACAGAAAAGTCAGATGTGTATTCATTTGGGGTAGTTCTGTTTGAAGTTCTTTGTGCAAGGCCTGTCATAGATCCAACACTTCCTAGAGAAATGGTCAACTTGGCAGAATGGGCAATGAAATGGCAGAATAAAGGACAGCTGGAGCAAATCATAGACCCAACACTTGCGGGCAAAATCAGGCCTGATTCTCTTAGGAAGTTTGGAGAAACTGCTGAGAAATGCTTGGCTGACTATGGTGTTGACAGGCCTTCTATGGGAGATGTCTTGTGGAATTTGGAGTATGCTCTCCAACTTCAGGAGGCTGTGGTTCAAGGTGATCCTGAAGAAAACAGCACCAATATGATTGGTGAACTCTCTCCACAGGTCAACAATTTCAACCAGGATGCAAGTGCTTCTGTAGCACAATTTGAAGGCTCAAGTGTGGATGATCTGTCTGGTGTTTCTATGAGTAGGGTGTTCTCACAGTTGGTGAAATCTGAGGGTAGATAG 2091 0.4347 MQKDPVMKEYSVNVTSDNLVITFKPSQNSTAFVSAIEVVSAPDDLIGDEASTLDPPAAYSGLVTQALETVWRVNMGGPIVTPINDTLQRTWIPDQSFLLEPNLASFVSNIDAVKYENGGSTTENTAPPTVYGTLTQMNSTYDPRSNFNVTWQFDVNPGFQYLVRFHFCDVVSKGLNELYFNVYIDSKLAAANVDLSVYSNNALGVPYHKDLVTALAVNNTIRVSIGPSDLNKDFPNAILNGLEIMKMNNSMGSLFSGAASVDMTSGSSSKKIGVIVGVSVGVVCAVVLAGLFFLLCRKTKLARQRQSKTWVPLSINDGTTSHTMGSKYSNGTTLSAASNFEYRVPFVAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPLSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEKGTLKSHLYGSGLPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQNKGQLEQIIDPTLAGKIRPDSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFNQDASASVAQFEGSSVDDLSGVSMSRVFSQLVKSEGR 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0507 696 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 6 669 - -
Ssu8g0507 696 Gene3D Phosphorylase Kinase; domain 1 318 431 - -
Ssu8g0507 696 Gene3D - 65 249 - -
Ssu8g0507 696 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Ssu8g0507 696 Gene3D Transferase(Phosphotransferase) domain 1 432 649 - -
Ssu8g0507 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Ssu8g0507 696 SMART serkin_6 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0507 696 Pfam Protein tyrosine and serine/threonine kinase 361 555 IPR001245 GO:0004672|GO:0006468
Ssu8g0507 696 Pfam Malectin-like domain 5 247 IPR024788 -
Ssu8g0507 696 ProSiteProfiles Protein kinase domain profile. 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0507 696 PANTHER OS07G0166700 PROTEIN 6 669 IPR045272 GO:0004714|GO:0006468
Ssu8g0507 696 CDD STKc_IRAK 362 627 - -
Ssu8g0507 696 SUPERFAMILY Protein kinase-like (PK-like) 333 627 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0507 Ssu-Chr8 8000511 8002601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0507 6 696 Receptor kinase-like Gene Family AT3G46290 70.630 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu8g0507 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0507 - - gmx:100305416 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0507 8 8000511 8002601 Ssu8g0507 8 8000511 8002601 ECH
Ssu8g0507 8 8000511 8002601 Ssu3g2571 3 78689781 78691340 ECH
Ssu8g0507 8 8000511 8002601 Ssu3g2571 3 78689781 78691340 PCT