Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0501 ATGGCTGATTTGAAAGCCATTGCGGAGTGCATGGTTTCCGCCGGCTACAGTAAAGAGTGCGTCAAGGTTTACATCCTAATGAGAAAATCGATTGTGGATGAGGCTCTGTATCATCTCGGAGTGGAGAGGCTCAGTTTCTCTCAGGTTCAGAAGATGGACTGGGAGGCGCTCGAGTCGAAGATTAAGTGCTGGCTGAACGCCGTCAAGATCGCCGTCGGGACTCTGTTTCACGGCGAGAGAACGCTCTGCGATTACGTCTTCGGCTCGCCGGAGAGGAAGATCGCGGAGTCCTGCTTCGCCGCGATTTGCAGAGACGGCGCCGCGGCGCTGTTCGGATTCCCGGAAAACGTGGCGAAGTGCAAGAAAACGCCGGAGAAAATGTTCAGGACGCTGGACTTGTACGAAGCGATCTCTGACAACAGACAACAAATTGAGTCCATCTTCTCCTCCGAATCAACCTCTTCCGTCAGATCTCAGGTAATCGTTTCTCAGGCGAGGCTCGGCGAGGCCGTTCGGACAATGCTAATGGACTTCGAATCGGCAATTCAGAAGGAATCTTCGAAGATTCCCGTGCCTGGCGGCGGGATCCACCCTCTCACGCGCTACGTCATGAACTACATCGCCTTCCTTGGCGATTACAGCGACGCGCTCGCGGATATTGTCGCCGATTGGCCGCAGAATCCGTTGCCGGAGTCTTACTACCGTAGTCCCGATCACGAGGGAAAGAATCAGTCGTCGGAGGTAGCTGAACGGATCGCGTGGCTGATACTTGTGCTTCTCTGCAAGCTCGACGGCAAAGCGGAACTCTACAAGGACGTTGCGCTCTCTTACCTGTTCCTCGCGAATAACATGCAATACGTCGTCGTAAAGGTGCGCAAGTCGAACCTAGGGTTCCTTCTCGGGGAAGATTGGTTAACAAAGCACGAGTCGAAGGTGAAGGAGTACGTCTCCAAGTACGAGCGCGTGGGATGGAGCAAGGTTTTTCCGTTGCTGCCGGAAAATCCAACGACGGAGCAAGCGATGGCAATCTTCGAGAGTTTCAGCCTCGCATTCCATGAAGCGTGTAAGACACAGTCCTCGTGGGTCTTACCCGACCCGAAACTGCGAGAAGAAATAAAAGCGTCGATAGCTTCGAAGCTGGTGGCAAGGTACAGGGATTTCTTCGGGAAGTATCGGGTCGGTTCGGAGGTGATTTTCGGGTTCTCGCCCGACGATTTGGGGAATTCTCTTTCTGACATTTTGTGTGGGACGGGACAATCGGGGAGCGTTTCGTCGCATTCTCGTTCTCCTCCTCCACATCGCTTCAAAAGCCCGTGA 1317 0.5391 MADLKAIAECMVSAGYSKECVKVYILMRKSIVDEALYHLGVERLSFSQVQKMDWEALESKIKCWLNAVKIAVGTLFHGERTLCDYVFGSPERKIAESCFAAICRDGAAALFGFPENVAKCKKTPEKMFRTLDLYEAISDNRQQIESIFSSESTSSVRSQVIVSQARLGEAVRTMLMDFESAIQKESSKIPVPGGGIHPLTRYVMNYIAFLGDYSDALADIVADWPQNPLPESYYRSPDHEGKNQSSEVAERIAWLILVLLCKLDGKAELYKDVALSYLFLANNMQYVVVKVRKSNLGFLLGEDWLTKHESKVKEYVSKYERVGWSKVFPLLPENPTTEQAMAIFESFSLAFHEACKTQSSWVLPDPKLREEIKASIASKLVARYRDFFGKYRVGSEVIFGFSPDDLGNSLSDILCGTGQSGSVSSHSRSPPPHRFKSP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0501 438 Pfam Exo70 exocyst complex subunit 63 411 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu8g0501 438 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 1 421 - -
Ssu8g0501 438 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 421 IPR004140 GO:0000145|GO:0006887
Ssu8g0501 438 Gene3D Exocyst complex component Exo70 1 421 - -
Ssu8g0501 438 SUPERFAMILY Cullin repeat-like 2 412 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0501 Ssu-Chr8 7886527 7887843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0501 1 417 EXO70 exocyst subunit family AT5G59730 55.760 1.32e-160 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0501 K07195 - gmx:100801773 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0501 8 7886527 7887843 Ssu8g0501 8 7886527 7887843 ECH