Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0500 ATGGCGAGAATCAAGGTGTACGAGCTGAGGAACAAAACGAAAGCAGAGCTTCTGACCCAATTGAAGGATCTCAAAGCGGAACTCGCTCTCCTCCGCGTCGCTAAGGTCACCGGCGGAGCCCCAAACAAGCTTTCCAAAATAAAAGTGGTTCGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAGGCAAAAGGCAGCGTTGAGGGAAGTATACAAGAAGAGGAAATATCTTCCTTTGGATCTGCGTCCCAAGAAGACTAGGGCTATCAGAAGGCGCCTCACGAAGCACCAGGCATCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATGCGAAAATATGCAGTTAAAGTGTAA 372 0.4839 MARIKVYELRNKTKAELLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQRQKAALREVYKKRKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKELYFPMRKYAVKV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0500 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Ssu8g0500 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Ssu8g0500 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Ssu8g0500 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Ssu8g0500 123 Gene3D - 78 123 - -
Ssu8g0500 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Ssu8g0500 123 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Ssu8g0500 123 CDD Ribosomal_L29_HIP 8 64 - -
Ssu8g0500 123 Coils Coil 7 34 - -
Ssu8g0500 123 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0500 Ssu-Chr8 7851322 7853164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0500 1 123 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 85.366 2.36e-70 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0500 K02918 - gmx:100789845 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0500 8 7851322 7853164 Ssu8g0500 8 7851322 7853164 ECH