Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0492 ATGGCTCGTAAAGCTGATAGTTCAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAAGGCAGTTAAGTCAGGCGCTACCTTTAAGAAGGCCAAAAAGATTCGAACATCTGTTACCTTCCATAGGCCAAAGACTTTGAAAAAGGATAGGAACCCCAAATATCCACGCATTAGTGCTCCACCAAGGAATAAGCTTGATCACTATCAGATACTGAAATATCCTCTCACAACTGAGTCCGCAATGAAGAAGATTGAAGATAACAACACTTTGGTTTTCATTGTCGACTTGCGAGCTGACAAGAAGAAGATCAAGGATGCAGTGAAGAAGATGTATGACATTCAGGCCAAGAAAGTAAACACCTTGATCAGGCCTGATGGGACAAAGAAGGCGTATGTCAGGTTGACACCTGATTACGACGCCCTGGACGTGGCCAACAAGATTGGAATTATCTAA 459 0.4314 MARKADSSKKADPKAQALKTAKAVKSGATFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0492 152 ProSitePatterns Ribosomal protein L23 signature. 130 145 IPR001014 -
Ssu8g0492 152 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 4 152 - -
Ssu8g0492 152 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 69 145 IPR012678 GO:0003735|GO:0005840|GO:0006412
Ssu8g0492 152 Pfam Ribosomal protein L23 72 134 IPR013025 GO:0003735|GO:0005840|GO:0006412
Ssu8g0492 152 Gene3D - 33 152 IPR012677 -
Ssu8g0492 152 TIGRFAM uL23_arch: ribosomal protein uL23 76 152 IPR019985 GO:0003735|GO:0005840|GO:0006412
Ssu8g0492 152 MobiDBLite consensus disorder prediction 1 16 - -
Ssu8g0492 152 MobiDBLite consensus disorder prediction 41 63 - -
Ssu8g0492 152 Hamap 50S ribosomal protein L23 [rplW]. 72 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Ssu8g0492 152 MobiDBLite consensus disorder prediction 1 23 - -
Ssu8g0492 152 Pfam Ribosomal protein L23, N-terminal domain 14 62 IPR005633 -
Ssu8g0492 152 PANTHER 60S RIBOSOMAL PROTEIN L23A 4 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0492 Ssu-Chr8 7741305 7742429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0492 35 152 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 92.373 4.95e-67 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0492 K02893 - gmx:100785534 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0492 8 7741305 7742429 Ssu8g0492 8 7741305 7742429 ECH
Ssu8g0492 8 7741305 7742429 Ssu3g2593 3 79347721 79348954 ECH
Ssu8g0492 8 7741305 7742429 Ssu3g2593 3 79347721 79348954 PCT