Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0489 atgattcaACAGGAAGTGCGCAAAGGTCCGTGGACAGAACAGGAAGACTTCAAATTGGTGTCCTTTGTTGGCTTGTTTGGAGACCGTAGATGGGACTTTATAGCTAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTCCATCCTGGCCTCAAACGAGGGAAGATGACAACCCAGGAAGAGCGCCTTGTGTTGGAGCTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCGCGCAAATTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGAACTCTGATGAGGAAAAAGGCTCAGGACAAGAAGCGAGGAGAAGCTGCATCACCAGCTCCTTCTAGTGTTCATTCCTCAATTTCCTCAAACAACCATGCAGTGGATCCACATGCTTCCAAAAAGGCTGGAGAAGAGAGCTTTTATGACACAGGAGGTCCTGGTATGATAGGCTCAACCCAAGATCAGGGTCAGAAAGGTGAACAAGGGTTCTCTATGGATGATATATGGAAAGATATTGACATATCAGAAGGGAACACTCTGCAGCCAGTGTATGATGGGCACAGTGAAGATGGCTGCAACTTCTCTTGCCCACAAGTGCCTTCTCCATCGTGGGAGTATTCTTCTGAACCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCCATGAGTGAACCATATTTTTCCTGCTATGCACAAGGCAACGTATTCTTTACCGGCTAA 753 0.4568 MIQQEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTTQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQDKKRGEAASPAPSSVHSSISSNNHAVDPHASKKAGEESFYDTGGPGMIGSTQDQGQKGEQGFSMDDIWKDIDISEGNTLQPVYDGHSEDGCNFSCPQVPSPSWEYSSEPLWVMDEESLFCPMSEPYFSCYAQGNVFFTG 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0489 250 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 233 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu8g0489 250 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 233 - -
Ssu8g0489 250 Gene3D - 63 133 - -
Ssu8g0489 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Ssu8g0489 250 MobiDBLite consensus disorder prediction 156 170 - -
Ssu8g0489 250 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Ssu8g0489 250 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Ssu8g0489 250 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Ssu8g0489 250 Gene3D - 8 60 - -
Ssu8g0489 250 CDD SANT 63 106 IPR001005 -
Ssu8g0489 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Ssu8g0489 250 MobiDBLite consensus disorder prediction 122 138 - -
Ssu8g0489 250 CDD SANT 10 55 IPR001005 -
Ssu8g0489 250 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Ssu8g0489 250 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Ssu8g0489 250 SMART sant 7 57 IPR001005 -
Ssu8g0489 250 SMART sant 60 108 IPR001005 -
Ssu8g0489 250 MobiDBLite consensus disorder prediction 109 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0489 Ssu-Chr8 7694821 7695950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0489 1 227 MYB Transcription Factor Family AT5G59780 61.135 1.14e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g0489 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0489 K09422 - gmx:100776886 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0489 8 7694821 7695950 Ssu8g0489 8 7694821 7695950 ECH
Ssu3g2599 3 79427888 79428867 Ssu8g0489 8 7694821 7695950 PCT