Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0486 ATGAAGAGAGGCAGGGAAGAGGGTGCGTTAAACATGGCTAATTGTTTGATGCTATTGACCAAAGTTGGTGAGAGTGAAACCAACCCATCAAAGGGTATAGAGTTGAGGGATATTGGTGATTTCAAGTGCAAAACCTGCAATAGAAGGTTCTCTTCTTTTCAAGCCCTTGGTGGCCACAGAGCAAGTCACAAGAAACCGAAGCTCATGGTCACAGATCTTTCGTGCCATCACCAGTTGCCGAGTCCAACCACGAAACCTAGGACGCACCCGTGTCCGATTTGTGGGCTTGAGTTTGCTATTGGACAGGCTTTGGGAGGGCACATGAGAAAGCATAGAAGTGCTATTAACGATGGTTTGCTCAGTCGTAAAGCTTCGTTGTCCATCTTGAAGAAATCGAAAGATGCTGAAAGGTTGAATTTGTGCTTGGACTTGAACTTGACGCCATTGGAGAATGATGATCTTAAGCTCAACCTAAGGACGCCCGTCCTGAATTGTTTCATTTGA 504 0.4563 MKRGREEGALNMANCLMLLTKVGESETNPSKGIELRDIGDFKCKTCNRRFSSFQALGGHRASHKKPKLMVTDLSCHHQLPSPTTKPRTHPCPICGLEFAIGQALGGHMRKHRSAINDGLLSRKASLSILKKSKDAERLNLCLDLNLTPLENDDLKLNLRTPVLNCFI 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0486 167 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Ssu8g0486 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Ssu8g0486 167 PANTHER ZINC FINGER PROTEIN ZAT5 5 165 - -
Ssu8g0486 167 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 5 165 - -
Ssu8g0486 167 Pfam C2H2-type zinc finger 89 113 - -
Ssu8g0486 167 Pfam C2H2-type zinc finger 41 66 - -
Ssu8g0486 167 Gene3D Classic Zinc Finger 38 111 - -
Ssu8g0486 167 SMART c2h2final6 41 63 IPR013087 -
Ssu8g0486 167 SMART c2h2final6 89 111 IPR013087 -
Ssu8g0486 167 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Ssu8g0486 167 SUPERFAMILY beta-beta-alpha zinc fingers 41 111 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0486 Ssu-Chr8 7609645 7610148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0486 1 158 C2H2 Transcription Factor Family AT2G28710 47.879 3.74e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g0486 zf-C2H2_6 1.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0486 - - gmx:100781211 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0486 8 7609645 7610148 Ssu8g0486 8 7609645 7610148 ECH
Ssu8g0486 8 7609645 7610148 Ssu3g2603 3 79496701 79497165 PCT