Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0484 ATGTCTCAGAGAATCGGGACAAAGCTCTTCGTCAACAGATTATCCTTTTACACTACACAGGAGCAGCTGAAGACGTTGTTCTCTCCATTCGGAGTAGTTACCAAAGCTGATCTAGTGGTGGATCCTGAAACTAAAAGGCCCAAAGGGTTTGGGTTTGTCTCCTACGACTCTGAAATTGAAGCGGAAAAAGCTATGAAAGCCATGAATGGCAGGATTGTTAATGGAAGGTTGATTTTGGTTGAACCGGCAAACGAGAAATGA 261 0.4368 MSQRIGTKLFVNRLSFYTTQEQLKTLFSPFGVVTKADLVVDPETKRPKGFGFVSYDSEIEAEKAMKAMNGRIVNGRLILVEPANEK 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0484 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Ssu8g0484 86 SMART rrm1_1 8 81 IPR000504 GO:0003723
Ssu8g0484 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 6 82 - -
Ssu8g0484 86 SUPERFAMILY RNA-binding domain, RBD 6 85 IPR035979 GO:0003676
Ssu8g0484 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Ssu8g0484 86 Gene3D - 2 86 IPR012677 -
Ssu8g0484 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 6 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0484 Ssu-Chr8 7565729 7567786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0484 6 86 Eukaryotic Initiation Factors Gene Family AT2G23350 35.802 2.51e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0484 K13195 - gmx:100781760 151.754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0484 8 7565729 7567786 Ssu8g0484 8 7565729 7567786 ECH