Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0474 ATGGAGAGTGACACTGCAGAGGCGGAGATGGAAAGGAGAGGATCAAGTGGGACTCATTCAGTTTTGCGATGGAGCCCCACAAAAGAGCAAATAAGCATGTTAGAGAACCTGTACAAGCAGGGAATAAGGACTCCCAATGCTGAGCAAATACAACAGATTACCTCTAGGCTCAGGGCGTATGGTCACATCGAGGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCGCGCCAAAGACAGAAGCTGAAGCAGAATCAACAAAGCATTGGATATTCCAATCGCTTTCTTTATGCCTCCCACCCCATTTGCCAAAATGTCGTCTGCACCCCTCATTGTTTGCAACAGAGTGGAATCAGCTTTTATCCTCAAAAAACAAAGGTGCTTGCAACTGGAGGTATTAGCTCAATGACTGAGAAAGTTGTGCCCTTGGAGATGCCAAGAATGTGTGATGGCCCGCAGATAGACGAACAATTGCAACAGAATGTCCCGGTTTATAACTCTAGCACCAACAACCGAGAAGCCTTAACTCTCTTTCCTCTTCACCCAACCGGCattttggaaggaaaaaaaattaatcaagtgTCTTCTCTTGCTTCAATTTCTGTTGATGTCCCTGATACATCTTCTGCTTCTCCTGGAATTGATGAAGATGGTAGTCCTGGAAATCAACCGTTCTTTGATTTCTTCACTTTTGAACAAGGGTCTCGATCGAGAGAGTGA 723 0.4357 MESDTAEAEMERRGSSGTHSVLRWSPTKEQISMLENLYKQGIRTPNAEQIQQITSRLRAYGHIEGKNVFYWFQNHKARQRQKLKQNQQSIGYSNRFLYASHPICQNVVCTPHCLQQSGISFYPQKTKVLATGGISSMTEKVVPLEMPRMCDGPQIDEQLQQNVPVYNSSTNNREALTLFPLHPTGILEGKKINQVSSLASISVDVPDTSSASPGIDEDGSPGNQPFFDFFTFEQGSRSRE 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0474 240 MobiDBLite consensus disorder prediction 206 240 - -
Ssu8g0474 240 Pfam Homeodomain 23 81 IPR001356 GO:0003677
Ssu8g0474 240 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 7 234 - -
Ssu8g0474 240 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 234 IPR044555 GO:0003700|GO:0099402
Ssu8g0474 240 ProSiteProfiles 'Homeobox' domain profile. 17 82 IPR001356 GO:0003677
Ssu8g0474 240 SMART HOX_1 19 86 IPR001356 GO:0003677
Ssu8g0474 240 MobiDBLite consensus disorder prediction 1 16 - -
Ssu8g0474 240 MobiDBLite consensus disorder prediction 1 22 - -
Ssu8g0474 240 CDD homeodomain 23 82 IPR001356 GO:0003677
Ssu8g0474 240 SUPERFAMILY Homeodomain-like 21 88 IPR009057 -
Ssu8g0474 240 Gene3D - 15 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0474 Ssu-Chr8 7458275 7459466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0474 10 231 Wox Gene Family AT5G59340 41.016 7.06e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu8g0474 Homeodomain 6.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0474 - - gmx:100779632 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0474 8 7458275 7459466 Ssu8g0474 8 7458275 7459466 ECH