Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0466 ATGGAACTTTTGAAGCCTTTGCACCCTTACCATGCACCCATTTTGCGCCTTCCCTTTCACGGGGTCCCCTCTTCTTCTCAATCTGAGTCTCAGGTTCCCCTCCCTGTGCCTATGGTTGGCAAGGTTTATGTAGCTGTTGGGAAATCGCTGGAGAAAGCTGTTCCCTTGCTTCAATGGGCTTTAAACCACTTTAGGAACACGGAAATCGTTATAGTTCATGCTTATCAACCTTCTCTCACGATCCCCACTCTGTTGGGGAAAATGCCAGCATCACAGGCTAGTCCTAAAGTGGTGTCTGCTTTTCGAAGAGTGGAAAGAGAACAGACCATGAAGCTTTTAGACAAGTATTTGAGCGTTTGCCACGCAGCTAGGGTTAAGGCAAGCATTATTGTAACTGAAGCTGACCAAGTCCACAAAGGAATTGTTGATTTGGTTATTAAGCATAATATTCAAAAGCTTGTCATTGGAGCAGTACCAGAAACGTAA 486 0.4506 MELLKPLHPYHAPILRLPFHGVPSSSQSESQVPLPVPMVGKVYVAVGKSLEKAVPLLQWALNHFRNTEIVIVHAYQPSLTIPTLLGKMPASQASPKVVSAFRRVEREQTMKLLDKYLSVCHAARVKASIIVTEADQVHKGIVDLVIKHNIQKLVIGAVPET 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0466 161 Gene3D HUPs 38 158 IPR014729 -
Ssu8g0466 161 PANTHER OS10G0100500 PROTEIN 33 160 - -
Ssu8g0466 161 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 38 158 - -
Ssu8g0466 161 PANTHER OS02G0152300 PROTEIN 33 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0466 Ssu-Chr8 7320386 7321221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0466 41 160 U-box Gene Family AT2G45910 35.833 2.43e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0466 - - gmx:100788846 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0466 8 7320386 7321221 Ssu8g0466 8 7320386 7321221 ECH
Ssu8g0466 8 7320386 7321221 Ssu3g2630 3 79881529 79885005 PCT