Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0465 ATGAAAGTGAAAAGGAATTCCGGTAAAGCAAATTACGCTGCCAAAAATGCTCCTCCATTCTGTGAAGTATGGTTTATCTATAAAGGTAAACACATTCGGACAAGGGAGGCTTCTGAAACACCATGTTCTTCGTCTTCATATACTCAACCTGAGATTGCCACCACAGAAAGCTTGAGATGTAGATCCTTTCAATATGGTAAGAATGAATTATTTGACTTGGAATATCTTCAACCAAATTCAGCAAGAACTACTATTGGTTCTGGAATCAGAAGTTGGGTTCAGGGGGAAATCATTGAAACCGAAGCCACTTTTTCATCCAAATCAACCAGTTGTAGCAGTCATTGTTCCCCCCAAAATTCTTCTGGGGGTTATTTAGATGCATATTTAGAGGCCATGGAAGAAAGCATTAACAAACAACTTATTGAAACCAAAAGAGAAGCTGAGACAGTAACAGACGAAGCCTTTGCTGAGTTATTAAAGTGCAAGAGGTTGGAAGATGAAGCCATGCAGGCTATAAGGAAGGTCAATTTGTTTGAATCTGCCCAAGCACGTGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCGCTGAGAACTACAGTACAAGAACAACAAAAGCTCTTGACTGAGAGTGAAGAAATTGCTGGTGAGCTACAAATGACCATGAGAAATATTGCCCTGCTAGATAGTCGTGCTCAGGAAGCAAACCGTAGGCGTGATGAAGCTGCAGATGAACTATCACTAATTCAAGAATCCATCTCAACCCTGTGGCAAGAGAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTCCGCTGGCTTGAGCGGTGGAAAAGTCGTGGACAAGTTGGAGCAGCTCATTGCAATGGGGTCATTGGGTTTGCTGAAGAATTACCTGAGTTAGCAGAATTTTCATTATCAGATATTCAAAATGCCACTTGTAACTTTTCCAATAGCTTTAAAATTGGGCAAGGTGGACATTGTTGTGTATACAAGGGAGAAATGTTGGGTAGGACTGTTGCTATAAAAAAGTTCCATCAACATAACATGCAAGGACCACTGGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTAATCACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGCAACAATTCCCCTTTGACATGGAATACCCGAGCACAAATGATTGCTGAAATCGCTAGTGCACTCTGCTTCCTACATTCTTTTAAACCTGAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCTTCACTTAGTTGCAAGATATGTGGATTTGGGTTCTGCAGGCTGGTGAGTGAGGAGTCTCTCCTCCGTCCTAGTTTCCGCTTGAGCACTGAACCAAAGGGTGCTTTCACATATACAGATCCAGAGTTCAACAGAACAGGAATACTAACAACCAAGTCTGACGTCTACTCCTTCGGGCTCATCATTTTACAACTCCTCACTGGTAGAACTCCAGTTGGATTAGCTGTTTTAGTACGCAACGCAGCTTCATGTGGAAAATTGTCTTCAATTCTGGATTCTTCGGCTGGGGAATGGCCCTCAGTTGTGGCAACACGATTGGTTGAGCTGGGATTGCAATGCTGTCAACAAAATCGAAGGGACAGACCACAGTTAACTCCTACCCTAGTGAGAGAATTGGAGCAGTTGCATGCTTCAGAAGAGCGACCTGTGCCATCTTTTTTCTCATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGACGGATTTACCTATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGGCATGATACTTCTCCCATGACTAATTTGAAATTGAGTCACCTGTTTCTTACTCCCAATCACGCACTTCGACTTGCCATCCAAGACTGGCTTAGCAAATCTTGA 1980 0.4293 MKVKRNSGKANYAAKNAPPFCEVWFIYKGKHIRTREASETPCSSSSYTQPEIATTESLRCRSFQYGKNELFDLEYLQPNSARTTIGSGIRSWVQGEIIETEATFSSKSTSCSSHCSPQNSSGGYLDAYLEAMEESINKQLIETKREAETVTDEAFAELLKCKRLEDEAMQAIRKVNLFESAQAREVKLRKEAEDALRTTVQEQQKLLTESEEIAGELQMTMRNIALLDSRAQEANRRRDEAADELSLIQESISTLWQERQQIRRQKMEALRWLERWKSRGQVGAAHCNGVIGFAEELPELAEFSLSDIQNATCNFSNSFKIGQGGHCCVYKGEMLGRTVAIKKFHQHNMQGPLEFHQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRAQMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLSCKICGFGFCRLVSEESLLRPSFRLSTEPKGAFTYTDPEFNRTGILTTKSDVYSFGLIILQLLTGRTPVGLAVLVRNAASCGKLSSILDSSAGEWPSVVATRLVELGLQCCQQNRRDRPQLTPTLVRELEQLHASEERPVPSFFSCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLFLTPNHALRLAIQDWLSKS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0465 659 ProSiteProfiles U-box domain profile. 588 659 IPR003613 GO:0004842|GO:0016567
Ssu8g0465 659 SUPERFAMILY Protein kinase-like (PK-like) 299 574 IPR011009 -
Ssu8g0465 659 Gene3D Phosphorylase Kinase; domain 1 292 387 - -
Ssu8g0465 659 Coils Coil 189 209 - -
Ssu8g0465 659 Pfam U-box domain 589 658 IPR003613 GO:0004842|GO:0016567
Ssu8g0465 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 590 659 IPR013083 -
Ssu8g0465 659 CDD RING-Ubox_WDSUB1_like 593 634 - -
Ssu8g0465 659 Pfam Protein tyrosine and serine/threonine kinase 320 571 IPR001245 GO:0004672|GO:0006468
Ssu8g0465 659 SUPERFAMILY RING/U-box 584 658 - -
Ssu8g0465 659 PANTHER OS02G0152300 PROTEIN 1 657 - -
Ssu8g0465 659 Coils Coil 161 181 - -
Ssu8g0465 659 ProSiteProfiles Protein kinase domain profile. 315 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0465 659 Gene3D Transferase(Phosphotransferase) domain 1 388 589 - -
Ssu8g0465 659 SMART Ubox_2 592 655 IPR003613 GO:0004842|GO:0016567
Ssu8g0465 659 Coils Coil 217 251 - -
Ssu8g0465 659 PANTHER OS10G0100500 PROTEIN 1 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0465 Ssu-Chr8 7317200 7320014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0465 7 656 U-box Gene Family AT2G45910 37.982 1.55e-146 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu8g0465 PK_Tyr_Ser-Thr 2.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0465 - - gmx:100788846 1211.82