Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0462 ATGGGAAAGCACTTGCTTTCTTCCGACCAGTCCATTGTTCAAATTCAGGACAATAATCCAGGATGCATGTGGGGCATGCTTCAAATTCTTGATTACCATCGTTGGCGCGTAAAAAATGTGTTTCCTCACAAAAGGAGAAGACATGTCACATATAAGAGAAAAGCCATTTTGTATAACCAACATGAAGACCAACAACATGGAGTTACAGAAGCAGAACCCCTCCTGGTCAGGCAACATGGCGAAAAATTGCGTGGTGCAGGCAAAAGTTCTCCCAAAAATCGCCAAAAGGAACCACGCACTGAGAAAAAGTTTAACAACGAAAACTCCAAAGGCAGTGGTACCATGGACTACTCAAGGAAAAACCAGGGCAGTAGTGGATATGCACTTCATCTGGAGAAAGATGGTGAGACAACAGAAGCTGCCCTTAACGATAAGTATATGGAAACAAACAAGCATAACAGAGACATTTCCAATAAATTTGAGAAACATACTGATATTTTTGAGTTACTTAGAGTGGAGAAGGATTTATTGCTCAAATTTCTACGAGACATAGACTTTGGTGGGAAAAAACTCCTTCAAGCTTCCCACAGCAAAGCAAGATTGACAAAATCTGGGTCATTTCCTTTAGCCTCAACATCACAGATGAGAAACATTCGCTCTAGTTCCTTAAAACACAAGCAAAACGAAATTTGGGCCTTTCCAAAGGGAGAAAAGTTGCTTGCTGGTGCTCAAGCATCAAACATGTCGGTGTCCAGTTTTGTGAAAGATATTTCTTATGAGAAGCCAATGCCTCTAGTGCGTGATCTTGGTGTGGGTAGTGCcatgaaacaaaaaacaaacatcTCTTCAAGGTCTCCTCAAGGATCAAATCACAAAGGGTGGAATCAGTTGGTTCTTCATCAGTTCAAAGCTATAAAACAGAAGATAAAGCATGCTCTTGTGGAATTAAGAAAAAGCGGTTACCAAACTTCTGCCGAAGCAATCCACCACAGAGCTTCACCTGAAAATAGCATCatcaatgatgatgaagagATCTCACAAAGCTTAGATGATGGCGTGATTCAAGAATACAGAAGGAGTAAAAGCTCAAATGAAACTAAAGCTTCTGATTATGATTCCAACAAACATGATGCTCGCCTCGTACGAAGAACATCCTCTCTGAATGAATCGTTGGATAGATATACTCAGTTGTTTGAGAAAAGCTTCAGCAAAGACGTTAAGTGGCAAAGCTCAAAGTctaaaagcttaaaattgaCAAACGAGGATAAGATCCACAAGAATGGGCATGCTCCTAGGTTTTCAAGAAGCAATTTGTCTATGCCTAATCTCGAGACTTTAGGCTTCATTCTACAAGAGGCACTTTTTGATACAAATGATATAGGGAACACAGTTCATAGAAAATCAGTGAGCCTTCCTTTAAAGATGGACAAGTCACTTGATCATTTTAAAGAGGCTGAAATTGTGGAAACAATAGGAGGGAGTGGCAGAGATGTAAATCCCAGTCTTTTATCTGATAAGATTATGGAGAAAATTGATGGAGGAGTTACCTGTGACCAAAAGGAGGACATGCATGAGCCAGCAGTGGGAGACGGAAGTTTTCCCcaagaaaaagaggaaatgaGTAATATGACTACCAATCTTAGCAAGGAGGCGATGGCATCTCTTGAAACTATCTATGAGGACAATATAAACAGCCATGCAGAAGATACAGAATGGAATGCCCGAGGGTCTACATTGGACGAATTGGAGACTGATTTATCATATAAGGGAAGCGTATATTATTCTTTGCCAGACTCTTCATTCAACAGAAATGCTAGTGTAACAGCTGAAGACACAGACAACatttccaatttcaaatatgtgaaaaatgttCTTGAATTTTCGGGCTTCTTGGGAAATGAGCACACACAGATGCGATACACAGTAGACCAGCCTCTAAAACCCTCCTTGTTCAAAGATTTGGATGAGACTTTGCAGTATGAAATTGAACCCTCTGAAGAAGAGACAATCAGCCCTTATGATCACCAGCTCCTTTTTCACTTAGTTAACGAGGTGCTGCTTGAAATATATGGGAGGTCCCCAACTTACTTCCCAAGGCCCTTCTCCTTCAACCCCCGCCTCCATCCAATGCCTCAAGGGCACTATCTTCTTAATGAAGTATGGGCTAGTGTTAATTCATTCCTGACCTTGAGACCTGAGCTAGATCAGACACTAGATGATGTTGTGGGTCGTGATTTGGCAAAAAATAGTGGCTGGATGATCCTTCAAGAGGAAGAGGAGTGTGTAGCACTTGAACTAGAGGAGATGATCTTGGAAGATTTGttagatgagtttatcttctcatga 2346 0.3934 MGKHLLSSDQSIVQIQDNNPGCMWGMLQILDYHRWRVKNVFPHKRRRHVTYKRKAILYNQHEDQQHGVTEAEPLLVRQHGEKLRGAGKSSPKNRQKEPRTEKKFNNENSKGSGTMDYSRKNQGSSGYALHLEKDGETTEAALNDKYMETNKHNRDISNKFEKHTDIFELLRVEKDLLLKFLRDIDFGGKKLLQASHSKARLTKSGSFPLASTSQMRNIRSSSLKHKQNEIWAFPKGEKLLAGAQASNMSVSSFVKDISYEKPMPLVRDLGVGSAMKQKTNISSRSPQGSNHKGWNQLVLHQFKAIKQKIKHALVELRKSGYQTSAEAIHHRASPENSIINDDEEISQSLDDGVIQEYRRSKSSNETKASDYDSNKHDARLVRRTSSLNESLDRYTQLFEKSFSKDVKWQSSKSKSLKLTNEDKIHKNGHAPRFSRSNLSMPNLETLGFILQEALFDTNDIGNTVHRKSVSLPLKMDKSLDHFKEAEIVETIGGSGRDVNPSLLSDKIMEKIDGGVTCDQKEDMHEPAVGDGSFPQEKEEMSNMTTNLSKEAMASLETIYEDNINSHAEDTEWNARGSTLDELETDLSYKGSVYYSLPDSSFNRNASVTAEDTDNISNFKYVKNVLEFSGFLGNEHTQMRYTVDQPLKPSLFKDLDETLQYEIEPSEEETISPYDHQLLFHLVNEVLLEIYGRSPTYFPRPFSFNPRLHPMPQGHYLLNEVWASVNSFLTLRPELDQTLDDVVGRDLAKNSGWMILQEEEECVALELEEMILEDLLDEFIFS 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0462 781 MobiDBLite consensus disorder prediction 358 377 - -
Ssu8g0462 781 PANTHER PROTEIN TRM32 1 781 IPR044257 -
Ssu8g0462 781 MobiDBLite consensus disorder prediction 107 125 - -
Ssu8g0462 781 MobiDBLite consensus disorder prediction 82 106 - -
Ssu8g0462 781 PANTHER PROTEIN TRM32 1 781 - -
Ssu8g0462 781 MobiDBLite consensus disorder prediction 82 134 - -
Ssu8g0462 781 Pfam Domain of unknown function (DUF4378) 618 777 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0462 Ssu-Chr8 7299727 7303241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0462 611 771 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 39.521 1.26e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0462 - - gmx:100784103 1262.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0462 8 7299727 7303241 Ssu8g0462 8 7299727 7303241 ECH