Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0458 ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATATAACACTGAGTTGAATTCAAAGTATGTGAGTACGGATGGAAATGAACTCAGCAGCACAAACGGTAAGGTTTCAGCAATCTCAGTGCCTCAGACTCCTCGGAGTGAGGGTGAGATCTTGCAGTCATCCAATTTAAAGAACTTTACCTTATCAGAACTTAAGACAGCCACTCGAAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATTGATGAGAATTCGTTGACTGCTACCAAACCTGGCACTGGCATTGTTATTGCTGTCAAAAGGCTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGgctGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAAATTGATTGGGTTTTGCCTTCAAGATGAACACCGCCTTCTCGTCTATGAATTTATGCCTCGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGCTCATATTTTCAACCACTTTCTTGGAGCCTCCGTTTGAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTACACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCAAATTATAGTGCAAAACTTTCGGATTTTGGGCTGGCGAAGGACGGACCAACAGGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTGCTAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTGCTGGAAATGTTATCTGGCAAGAGGGCAGTCGACAAGAATAGACCATCAAGACAACACAATTTGGTGGAATGGGCTAAACCTTACCTGGCAAACAAACGTAAGATATTCCACGTGTTGGACAGCCGGCTTGAAGGTCAATATTCAACGGATGATGCCTTTAAGGTAGCCACCCTTGCCTTGCGATGCCTATCAACAGAATCAAAGTTCAGGCCAAACATGGATGAAGTGGTTACAACTTTGGAGCAGCTGCAGGTTCCTAATGTAAATGGAGGCAATCAAAATCCTGCTAACGGGCCACGAGCTCGTAGAAGAAGTGTTGATGTAAATAGAGGCAATCAAAATCCTTCTGTTAATGGGTCTCGAGTTCGTAGAAGAAGTGCTGATGATATTAACCGTATGGGAGCTCCCACAGCTTATCCCCGGCCCTCTGCATCCCCTCTCTATACGTGA 1278 0.4429 MGVCLSAQIKAESPYNTELNSKYVSTDGNELSSTNGKVSAISVPQTPRSEGEILQSSNLKNFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVKLIGFCLQDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAETKVIYRDFKTSNVLLDSNYSAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSRQHNLVEWAKPYLANKRKIFHVLDSRLEGQYSTDDAFKVATLALRCLSTESKFRPNMDEVVTTLEQLQVPNVNGGNQNPANGPRARRRSVDVNRGNQNPSVNGSRVRRRSADDINRMGAPTAYPRPSASPLYT 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0458 425 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Ssu8g0458 425 PANTHER OS01G0588500 PROTEIN-RELATED 25 378 - -
Ssu8g0458 425 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Ssu8g0458 425 MobiDBLite consensus disorder prediction 358 425 - -
Ssu8g0458 425 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0458 425 MobiDBLite consensus disorder prediction 358 375 - -
Ssu8g0458 425 Gene3D Transferase(Phosphotransferase) domain 1 160 371 - -
Ssu8g0458 425 CDD STKc_IRAK 80 359 - -
Ssu8g0458 425 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 25 378 - -
Ssu8g0458 425 SUPERFAMILY Protein kinase-like (PK-like) 51 361 IPR011009 -
Ssu8g0458 425 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Ssu8g0458 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0458 Ssu-Chr8 7250993 7253327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0458 22 356 Glycoside Hydrolase AT3G07070 45.429 5.27e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu8g0458 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0458 - - gmx:100798404 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0458 8 7250993 7253327 Ssu8g0458 8 7250993 7253327 ECH
Ssu8g0458 8 7250993 7253327 Ssu3g2634 3 79920566 79923795 PCT