Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0455 ATGGGTGTGGTCAGTACGGTGCTATGCCTTATCTCCCTAATGTGGATGGCGGAGGCTCGAATTCCCGGCGTTTACTCTGGCGGGGCGTGGCAAGGTGCTCATGCTACTTGTTACGGAGGATCCGATGCTTCCGGCACCATGGGGGGAGCGTGTGGGTACGGAAACTTGTACAGCCAAGGGTACGGAGTGAACACGGCAGCGTTGAGCACAGCACTTTTCAACAGCGGCCTCAGCTGCGGTGCGTGCTTTGAGATCAAATGCGCAAACGACAGACAGTGGTGTCATTCCGGAAGCCCTTCCATCTTCATCACCGCCACCAACTTCTGCCCCCCAAATTACGCTCTTCCGAACGACAATGGCGGGTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCCGAGTACCGTGCCGGCATTGTACCTGTCGCCTATCGCAGGGTGCCATGTAGAAAGCACGGGGGGATCAGGTTCACAATCAACGGTTTCCGTTACTTCAACCTGGTGCTGATCAGCAACGTCGCGGGTGCAGGGGATATCGTGCACGCCTACGTTAAGGGCTCTCGAACCGGGTGGATGCCCATGAGCAGAAACTGGGGTCAGAACTGGCAGTCAAACGCCGTTTTGGCGGGTCAGGCTTTGTCCTTCAGGGTTACCGGCAGTGACCGTCGCTCTTCCACCTCTTGGAACATTGTTCCACCCAGTTGGCAATTTGGTCAAACTTTCACTGGAAAGAACTTTCGTGTCTGA 771 0.5629 MGVVSTVLCLISLMWMAEARIPGVYSGGAWQGAHATCYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGIRFTINGFRYFNLVLISNVAGAGDIVHAYVKGSRTGWMPMSRNWGQNWQSNAVLAGQALSFRVTGSDRRSSTSWNIVPPSWQFGQTFTGKNFRV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0455 256 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Ssu8g0455 256 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Ssu8g0455 256 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Ssu8g0455 256 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Ssu8g0455 256 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Ssu8g0455 256 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Ssu8g0455 256 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Ssu8g0455 256 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Ssu8g0455 256 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Ssu8g0455 256 PANTHER EXPANSIN 6 255 - -
Ssu8g0455 256 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Ssu8g0455 256 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Ssu8g0455 256 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Ssu8g0455 256 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Ssu8g0455 256 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Ssu8g0455 256 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Ssu8g0455 256 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Ssu8g0455 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 162 IPR007112 -
Ssu8g0455 256 Pfam Lytic transglycolase 65 152 IPR009009 -
Ssu8g0455 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Ssu8g0455 256 Gene3D - 162 254 IPR036749 -
Ssu8g0455 256 PANTHER EXPANSIN-A15 6 255 IPR002963 GO:0009664
Ssu8g0455 256 SUPERFAMILY Barwin-like endoglucanases 12 180 IPR036908 -
Ssu8g0455 256 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Ssu8g0455 256 SMART dpbb_1 65 152 IPR007112 -
Ssu8g0455 256 Gene3D - 17 158 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0455 Ssu-Chr8 7215068 7216179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0455 1 256 Expansin Gene Family AT2G39700 83.594 3.61e-161 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0455 - - gmx:100791522 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0455 8 7215068 7216179 Ssu8g0455 8 7215068 7216179 ECH
Ssu8g0455 8 7215068 7216179 Ssu6g2924 6 67389356 67392030 ECH
Ssu8g0455 8 7215068 7216179 Ssu3g2636 3 79943312 79945672 ECH
Ssu3g1304 3 32363656 32368062 Ssu8g0455 8 7215068 7216179 ECH
Ssu8g0455 8 7215068 7216179 Ssu3g2636 3 79943312 79945672 PCT