Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0450 ATGGATAAAAGAGTCTCCACAATCAATATTACTGATGATGAAGAGTCTTGCTTGGATGAGAGTGATTCCTCCGCTGTCCTTGGCTACATAAAGCAAATGCTAATGGAAGAGGACACGGAGGAGAAGTACAGCATGTTCCAAGATTCCTTAGCTCTCCAAGATACTGAGAGATCATTTTATGAGGTTATAACTGATAACTACCCTCCTCctcatccttcttcttcttcttccacaCACCATCATCTTGAAAACTACCCCAGCGTGGAGAGCCCTGATCAAAGTTTCTCTGGTAGCTCCAGTGATAATAGTACTCTCGGCTGTGCCAGTAGTTGCAGCACTAGCAACTCCGCTGAGTCTCACTTGAACCCCGTACTGCCAAACACTTTCCCTATTCCTTCTAACTTTGTTATCCACTCAAACACCCACTCTGCCATCAATACTGGATTTGGATTCTTCAACAATGGCTGGAGAGGTGTTGAGCAAGGTACCCGGTTCCTTCCTAAACATACTGATACTCCATTCATTGTTGATCCGGACAACACAACCTTTTTCCCTTCTTTCACGAATGCTCCGCATGTGGTAATTAAGACAGAAACAGAAGAAAGTGTTGAAGGAGAGCATTTTCACACTGTCTCAAGAGGACTGAAAAATCGGGAACGGGAAGAATATGAGGTAGATGGGAGAAGCAGGAAGCAATCAGCAGCATACATGGATGACAGTAAGCTATCAGAATTGTTTGATAAAGTGCTGCTAGGCACTGGGTTAGGAAAAGGGGTACCTCCTAACACAACCGTTCACCAAAACCATGAAACAATATTAACAAACATGTTGTCTGGTGGAGGTGTCTCGGAAAATGACGAGGAAGTTGTGGGTCTGAGGGCGTTGTTGATGCTTTGTGCACAAGCTATTGCTTCTAATACTCCTTCATTTGCTAAGCAATTAGTAAAGCAGATTAAGCAGCATTCTTCTCCAATAGGCGATGAGACTCAGAGGCTTGCACATTACTTTGGAAATGCCCTTGAAGCACGCTTGGACGGAACCGGTTACCAGGTTTATAGTGTTCTATCCTCCAAAAGAACCTCTGCTAAAGACATGATAAAAGCTTACCATGTACATGCTTCACTGTGCCCATTTGAAAAGCTAGCAATCATTTTTGCCAACAATTCAATTTGGAATCTAGCCAAGGAAGCGGAAACTCTTCACATCATAGACTTTGGTATTCGCTATGGCTTCAAGTGGCCTGCACTTATCAACCGTGTATCAAAACGTGCTGGTGGGCCACCCAAGCTACGTATCACGGGGATAGAGCTGCCGCAACCAGGTTTCAGGCCAGAGGAGAGGGTGCACGAGACAGGGCGTCGACTTGCATGTTATTGCAAGCGTTTCAATATTCCATTTGAGTTCATTGCTATTGCACAGAGATGGGACACCGTCAGAGTTGAGGACCTCAAGATAGAGAGAAACGAATTTGTGGCTGTGAACTGCATGTTTCGGTTTGAGAATCTGCTTGACGAGACTTCCTGGTTCTCCACATCCATGACACAGGCAACCGCTTGA 1557 0.4419 MDKRVSTINITDDEESCLDESDSSAVLGYIKQMLMEEDTEEKYSMFQDSLALQDTERSFYEVITDNYPPPHPSSSSSTHHHLENYPSVESPDQSFSGSSSDNSTLGCASSCSTSNSAESHLNPVLPNTFPIPSNFVIHSNTHSAINTGFGFFNNGWRGVEQGTRFLPKHTDTPFIVDPDNTTFFPSFTNAPHVVIKTETEESVEGEHFHTVSRGLKNREREEYEVDGRSRKQSAAYMDDSKLSELFDKVLLGTGLGKGVPPNTTVHQNHETILTNMLSGGGVSENDEEVVGLRALLMLCAQAIASNTPSFAKQLVKQIKQHSSPIGDETQRLAHYFGNALEARLDGTGYQVYSVLSSKRTSAKDMIKAYHVHASLCPFEKLAIIFANNSIWNLAKEAETLHIIDFGIRYGFKWPALINRVSKRAGGPPKLRITGIELPQPGFRPEERVHETGRRLACYCKRFNIPFEFIAIAQRWDTVRVEDLKIERNEFVAVNCMFRFENLLDETSWFSTSMTQATA 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0450 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 507 IPR005202 -
Ssu8g0450 518 MobiDBLite consensus disorder prediction 68 101 - -
Ssu8g0450 518 ProSiteProfiles GRAS family profile. 283 518 IPR005202 -
Ssu8g0450 518 MobiDBLite consensus disorder prediction 1 21 - -
Ssu8g0450 518 Pfam GRAS domain family 292 507 IPR005202 -
Ssu8g0450 518 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 15 507 - -
Ssu8g0450 518 MobiDBLite consensus disorder prediction 63 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0450 Ssu-Chr8 7145915 7148328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0450 26 506 GRAS Transcription Factor Family AT1G07530 45.336 1.33e-130 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu8g0450 GRAS 5.6e-61 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0450 - - gmx:100793066 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0450 8 7145915 7148328 Ssu8g0450 8 7145915 7148328 ECH
Ssu3g1301 3 32138816 32141050 Ssu8g0450 8 7145915 7148328 ECH
Ssu4g2164 4 49642504 49644723 Ssu8g0450 8 7145915 7148328 ECH
Ssu8g0450 8 7145915 7148328 Ssu3g2643 3 80053580 80056167 PCT
Ssu3g2644 3 80062403 80064466 Ssu8g0450 8 7145915 7148328 PCT