Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0449 ATGGATCCAAACTTTGTTGGAAGCGGCTACGGGTTTGATCATGAAGGGAACTTAGTCCAAGTCCGTGAATCAAACCAGTGGGACCTCAACGGACACTACATGAACCTTGTCACTGATCCTCTTTTTTATCAATCCGATGTGGACCCACGTGGTTTTTCTCCGAACACAATCTTAAACTCGGAGCCGCTTGTTTCATCCTCGGCCGCCGCGGTGACCGTGATGGATCCTTCCCTTGAAGAAGACACTGATTTTTCAGAAACCTTCAAGTTCATAAGTCAAATTCTGATGGAAGAGAACTTTGAGCAGAAACCGTGCATGTGTTATGACCCTCTGAGTCTGCAACACACTGAGCAATCCTTCTATGATGCCTTGGAATTGGAGCCAACGCTGCCTCTTTCCCCTAATCAGCACCCCCTTGAGAGCCCCGATTGGAATTCTTCTAATTCCACTTCTGATTATGCCAATTCTCACGATTTGAAGCCTCCTTCACCAGACACACCAGTttctggtggtggtggtgatgctTCGCTTTCCTCTTCCCACGCGCCCTCTTTGCTTGTTCCTCCGCATGCTTTGACTAAAATTAACGATGGAACCTTGGATTTGGATTCTTCTGTAACCAAGCTTTTGGCTGAAAATATTTTCAGTGATGCAGACTCTATGTTGCAGTTTAGAAGAGGGTTGGAGGAGGCTAGTAAGTTTCTTCCACAGAGACCTCAGCTTTTCACTGGGTTGGAGAGCACCACGGCGGCTGCAGAACCAAAGGGAAAGGCAACAGTGGAGGTGGAGAACGCGCGAGGGGTGAAGAGTAGAAAGAATCACGCGCGCCAGGAtgaggaagaaggaagaagcAACAAGCAGTCTGCGGTTTGTGTTGAGGACGAGAGTGAAATATCTGAGATATTTGATAGGGTGTTGCTTAGCGTTGAAAATGTGCCACTGTGTGCTGAGCAGAAGAATGGACCGGTGGCAATGGGAGATAGTAGCGCAAAGCTGAGTGAGCAACCGCATTTGTTTGATGGAGGGAAGGGTCGTTCCAAGAAGCAAGGGAGGAAGAAGGAAACGGTGGATTTGAGGACCCTTTTGGTTCTGTGTGCACAGGCTCTGTCTGCCAGTGACAACAGGACTGCTAATGAATTGCTGAAGCAGGTTCGGCAGCATTCTTCTGCCTTGGGTGATGCCTCACAGAGGTTGGCTCATTATGTGGTCAATGCTCTAGAGGCTCGCTTGGTTGGTGCTGGAACTGGAACCCAAATATTTTACATGAGCCACAAGAAGTTCACTACTACTGATTACCTGAAAGCTTACCAAGTTTTCATATCTGCCTGCCCTTTCAAGAAATTTGCACATTTCTTtgcaaataaaatgattttgaaaacaGCTGAAAGGCACAAACACTTcatattattgattttggtaTCCTGTATGGTTTCCAGTGGCCAATTCTTATCAGGTTTTTATCACTTAGAAGTGGTGGGCCTCCCAAGCTGCGCATCACAGGAATAG 1506 0.4495 MDPNFVGSGYGFDHEGNLVQVRESNQWDLNGHYMNLVTDPLFYQSDVDPRGFSPNTILNSEPLVSSSAAAVTVMDPSLEEDTDFSETFKFISQILMEENFEQKPCMCYDPLSLQHTEQSFYDALELEPTLPLSPNQHPLESPDWNSSNSTSDYANSHDLKPPSPDTPVSGGGGDASLSSSHAPSLLVPPHALTKINDGTLDLDSSVTKLLAENIFSDADSMLQFRRGLEEASKFLPQRPQLFTGLESTTAAAEPKGKATVEVENARGVKSRKNHARQDEEEGRSNKQSAVCVEDESEISEIFDRVLLSVENVPLCAEQKNGPVAMGDSSAKLSEQPHLFDGGKGRSKKQGRKKETVDLRTLLVLCAQALSASDNRTANELLKQVRQHSSALGDASQRLAHYVVNALEARLVGAGTGTQIFYMSHKKFTTTDYLKAYQVFISACPFKKFAHFFANKMILKTAERHKHFILLILVSCMVSSGQFLSGFYHLEVVGLPSCASQE 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0449 501 MobiDBLite consensus disorder prediction 254 288 - -
Ssu8g0449 501 Pfam GRAS domain family 358 465 IPR005202 -
Ssu8g0449 501 MobiDBLite consensus disorder prediction 338 352 - -
Ssu8g0449 501 ProSiteProfiles GRAS family profile. 349 501 IPR005202 -
Ssu8g0449 501 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 53 463 IPR005202 -
Ssu8g0449 501 MobiDBLite consensus disorder prediction 259 288 - -
Ssu8g0449 501 MobiDBLite consensus disorder prediction 323 352 - -
Ssu8g0449 501 PANTHER SCARECROW-LIKE PROTEIN 34 53 463 - -
Ssu8g0449 501 MobiDBLite consensus disorder prediction 134 157 - -
Ssu8g0449 501 MobiDBLite consensus disorder prediction 129 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0449 Ssu-Chr8 7128621 7130126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0449 87 459 GRAS Transcription Factor Family AT1G07530 39.713 5.50e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu8g0449 GRAS 7.1e-23 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0449 - - aprc:113855970 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0449 8 7128621 7130126 Ssu8g0449 8 7128621 7130126 ECH
Ssu8g0449 8 7128621 7130126 Ssu3g2644 3 80062403 80064466 PCT
Ssu3g2645 3 80071729 80073879 Ssu8g0449 8 7128621 7130126 PCT