Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0448 ATGCTTTCCACGAACTCTCTCGTGCAACAAAACTTTGGTGGTCCTATCTCAGTATTTTCAAATCAGAACCAAGTAACGAAGGGGTTTGAGTTTGATGATTCATCGTCCCCTTCTTCTGGCACAAGCTCAAGTGGAGAATCCATGGAGGTAACTAAGTATTCCAACCCCATCCTCAGATACATAAGCGACATCCTCATGGATGAGGAAGACGACTTGGAGAGCAAACCCTGTATGTTGCAGGAATGTTTGAGACTCCAGGCTGCTGAAAAATCCTTCTATGATGTCCTTGGCCATAGCCACCCTTCATCACTCCATCAAAATCCTTCTTGTTTCAGTGATGAAAGCATTGGCATCGCAGACTCTGATGGAAACTTTGGTCGCACTGCTAGTTTTGAGAGCAACAGCAGCTGCACCACTGATAACTCAAGTGAATCTGACTTGGTCAACGCTGTGGGTGAATTTGACCCTTCTTTCCTACAACTACAAACCCCTCTAGTTGATTCCCCAGATGTAGTTCCTGATCCATTTGGGGAGTCACAAGCTGCTGTTTATTTTCATGATGGAACCTGGAATCTCTTTCAGTCTCAGACCATGCCGCTGATTGTGGAAGAGGGTTCTTCAGCTTCAGCaccaagagaaaagagaagcCATCAGatggatgatgatgatggtgctTCTCATGAacaagaaggaagaagaggCAGCAAGGTTTCAGCTGTCTTTTCTGACGAGTCAGAGCCAACAGAGATCTTAGATGAGGTACTGCGTTTTCAAAGTGGAAGAAGTCAATCCCTCCATTGTGCTGCTACTGAACCATCACAGAGTGTTGATTTAGGAGGGTCCAATGGAAAGGCAACACGTTCACGTTCAAAGAAAGGGTCCACCAACACCAACACGGGGACAGCTGTAGATCTATGGACCCTTCTAACTCAATGTGCACAGGCAGTGGCAAACTATGACCAAAGGAATGCAAATGACTTACTCAAGCAGATTAGGCAACACTCTTCACCTTATGGGGATGGACTCCAGCGTTTGGCTCATTACTTTGCCAATGGTCTTGAGACAAGATTGGCTGCTGGGACCCCAAAATACATGCCCCTAGAAGTGACAACTGCTGCAGACATGTTGAAAGCTTACAAGCTATTTGTTACATCCTCTCCTTTGCAGAGGTTGTCAAATTGTTTGACAACCACGACGATCATTAGTCTTGTGAAAAATGAGAGCAGCGTTCATGTTATTGACTTTGGCATTTGCTATGGTTTTCAGTGGCCCTGCCTTATCAAAAAGCTGTCAGAAAGGCATGGTGGTCCTCCAAAGCTTCGTATAACAGGAATTGATCTTCCTCGGCCGGGATTTCGGCCTGCAGAAAGGGTTGAGGAGACGGGGCGGCGTTTGGAAAGCTACTGCAAGAAGTTCAAGGTCCCTTTTGAATACAACTGCCTTGCACAGAAATGGGAAACTATAAGACTTGAGGATCTCAAGATAGACAGGAATGAATTAACTGTTGTTAGTTGTTTGTACCGGCTGAAGAACCTGCCTGATGAAACTGTGGCACTGAACTGTCCAAGAGATGCTGTGTTGAAGTTGATCAGGAAGATCAATCCAAACTTCTTAATCCATGGGGTAGTCAATGGCACTTATAGTGCACCCTTTTTCCTGACTCGGTTCAGGGAGGCACTCTACCACTTCTCATCACTGTTTGATATGTTTGAGGCCAATGTGCCTCGGGAAGACCCGCAAAGAGTGGTGCTTGAGAAAGGGTTGTTTGGAAGGGATGCCATCAATGTTATAGCATGTGAGGGGGCTGAGAGGGTTGAGAGACCAGAGACCTACAAGCAGTGGCAGGTTAGGAACCTGAGAGCTGGGTTCAAGCAACTCCATTTGGATCCTCAGTTGGTgaatgatgccaaagaaatggtGAAGAGGGAATATCACAAAGATTTTGTAGTGGCTGAGGATGGCAAGTGGGTTTTGCACGGGTGGAAAGGGCGTATTCTGAATGCCATTTCTGCTTGGACTCCTGCTTAA 2028 0.4448 MLSTNSLVQQNFGGPISVFSNQNQVTKGFEFDDSSSPSSGTSSSGESMEVTKYSNPILRYISDILMDEEDDLESKPCMLQECLRLQAAEKSFYDVLGHSHPSSLHQNPSCFSDESIGIADSDGNFGRTASFESNSSCTTDNSSESDLVNAVGEFDPSFLQLQTPLVDSPDVVPDPFGESQAAVYFHDGTWNLFQSQTMPLIVEEGSSASAPREKRSHQMDDDDGASHEQEGRRGSKVSAVFSDESEPTEILDEVLRFQSGRSQSLHCAATEPSQSVDLGGSNGKATRSRSKKGSTNTNTGTAVDLWTLLTQCAQAVANYDQRNANDLLKQIRQHSSPYGDGLQRLAHYFANGLETRLAAGTPKYMPLEVTTAADMLKAYKLFVTSSPLQRLSNCLTTTTIISLVKNESSVHVIDFGICYGFQWPCLIKKLSERHGGPPKLRITGIDLPRPGFRPAERVEETGRRLESYCKKFKVPFEYNCLAQKWETIRLEDLKIDRNELTVVSCLYRLKNLPDETVALNCPRDAVLKLIRKINPNFLIHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEANVPREDPQRVVLEKGLFGRDAINVIACEGAERVERPETYKQWQVRNLRAGFKQLHLDPQLVNDAKEMVKREYHKDFVVAEDGKWVLHGWKGRILNAISAWTPA 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0448 675 MobiDBLite consensus disorder prediction 265 297 - -
Ssu8g0448 675 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 674 IPR005202 -
Ssu8g0448 675 Pfam GRAS domain family 307 673 IPR005202 -
Ssu8g0448 675 MobiDBLite consensus disorder prediction 204 246 - -
Ssu8g0448 675 MobiDBLite consensus disorder prediction 208 239 - -
Ssu8g0448 675 ProSiteProfiles GRAS family profile. 296 673 IPR005202 -
Ssu8g0448 675 MobiDBLite consensus disorder prediction 29 50 - -
Ssu8g0448 675 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 14 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0448 Ssu-Chr8 7095282 7097309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0448 53 674 GRAS Transcription Factor Family AT2G29060 44.708 1.47e-175 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu8g0448 GRAS 1.5e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0448 - - aprc:113855970 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0448 8 7095282 7097309 Ssu8g0448 8 7095282 7097309 ECH
Ssu8g0448 8 7095282 7097309 Ssu3g2646 3 80094246 80095625 PCT