Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0438 atgagaaattaccATGTATTTTCCAGCACAGACAATGTCGGGCATCGCTATGTAGCGGACGCGGTCCTCTCTTCTGACTCTTTAAAAGGATGCTCTCTATTTCTCATCCCTttggtaattaaaatttcatttcctCTCCGACTCAACCCTTCTGTAGAAAAAATGAACTCTGACACGACGTCGTATTGGTGCTACAGCTGCACCCGCTTCGTTCAAATCCTGGAGCACAACGACGTCGTTTGCCCGCACTGCCAAGGCGGCTTCGTCGAGAAGGTCAACACCGACGGGCATTCGCCGTCGGCGGTCTCCCTCGTCGCCGACGGCTTCCACGCGCCGAGGAGGCAGGGGTTCCGCCGGCGACGCCGCAACGCCGGGAGCCACTCGCCGTTCAACCCGGTGATCGTGCTCCGGGGACCGGGGGACGACGAGGAGAGCAGCTTCGAGCTGTACTACGACGGCGACGACGGCGCCGGGCTCCGGCCGCTGCCGTCGACGATGTCGGAGTTCCTGCTGGGATCCGGCTTCGACCGGCTGCTGGAGCAGGTCTCGCAGATCGAGATCAACGGCCTCGGGAGGCCGGAGAACCCGCCGGCGTCGAAGGCGGCGATAGAGTCAATGCCGACGGTTCAGATCGACGAGTCTCAGACGGAGACGCACTGCGCAGTGTGCAAAGAAGCCTTCGAACTGGGCGCGTCGGCGCGTGAGATGCCTTGCAGGCATCTCTACCACTCCGATTGCATTCTCCCGTGGCTCTCGGTGCGAAACTCGTGCCCTGTGTGCCGGCACGAGTTGCCGCCGGAGCAGGCCCCGTCGGAGAGCCGAGTCGCCGGTCAGATCGAGGAGGAGGCGGTGGGGTTGACCATATGGAGGTTGCCGGGCGGCGGATTCGCCGTCGGCAGGTTCGCCGGCGAGAGCCACCTTCCGGTGGTGTACACGGAGATGGATGGCAGTGGAAACTCCAACGAAGGTTCAAGAAGAATCTCTGTGACAATGGGAAGCGGTAGGGTTAGGGAGAGTCGTGGAATTGGGAGAATTTTCCGCAATTTGTTTGGGAGAATTGGCGCTTTGACTAGAAGCCGTAGCTTGTCATCTTCGTTCTTcagtagaagaagaagaagaagtagtaGAACCTGGGTCTTGGAAGGTTGA 1149 0.5762 MRNYHVFSSTDNVGHRYVADAVLSSDSLKGCSLFLIPLVIKISFPLRLNPSVEKMNSDTTSYWCYSCTRFVQILEHNDVVCPHCQGGFVEKVNTDGHSPSAVSLVADGFHAPRRQGFRRRRRNAGSHSPFNPVIVLRGPGDDEESSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGLGRPENPPASKAAIESMPTVQIDESQTETHCAVCKEAFELGASAREMPCRHLYHSDCILPWLSVRNSCPVCRHELPPEQAPSESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMDGSGNSNEGSRRISVTMGSGRVRESRGIGRIFRNLFGRIGALTRSRSLSSSFFSRRRRRSSRTWVLEG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0438 382 Pfam zinc-ribbon 60 91 IPR039525 GO:0061630
Ssu8g0438 382 SUPERFAMILY RING/U-box 214 267 - -
Ssu8g0438 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 57 340 - -
Ssu8g0438 382 Pfam Protein of unknown function (DUF1117) 284 372 IPR010543 -
Ssu8g0438 382 PANTHER OS05G0110000 PROTEIN 57 340 - -
Ssu8g0438 382 Pfam Ring finger domain 219 261 IPR001841 -
Ssu8g0438 382 CDD RING-H2_RNF126_like 220 261 - -
Ssu8g0438 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 267 IPR013083 -
Ssu8g0438 382 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Ssu8g0438 382 SMART ring_2 220 260 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0438 Ssu-Chr8 7018346 7019494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0438 151 272 C3H Transcription Factor Family AT5G01980 39.516 1.43e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0438 - K11982 vun:114185595 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0438 8 7018346 7019494 Ssu8g0438 8 7018346 7019494 ECH
Ssu3g1287 3 31547829 31548761 Ssu8g0438 8 7018346 7019494 ECH
Ssu8g0438 8 7018346 7019494 Ssu3g2653 3 80180668 80181747 PCT