Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0435 ATGAGAGAACAAAGGTTTGGAGATAAGATGCACGGAGTAACTCTCCCTCTCGCTGCAAACACCTTCCTTTGTTGTGCTCACAGTTACCTTCCTTTGAGATCTCTTCTACCACTTACCCCTCCACCAAGTTGTTGCATACCCACTTGTAAAATTAGCTATGGAAGTCGTTTCAACCATTCACAGTGGAAGCACGAGACAAAAGAAAGATGGAGCAATAGAATGATGGTTGTAAGAGCAAGGCGTAGCGAGTCTCCGTACGAAGTTTTGGGCGTGTCTCCATCCGCAACTGTCGACGAAATCAAAAGGGCGTATCGGAAACTCGCTCTTAAGTATCATCCCGATGTCAATAAAGAGGATAAGGCACAGGAGAAATTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGTTCCCGCAAAAAATATGATTCTGGAAGTCGAGGTTATGATTTTTCTCAAGGAAGCCGAAATAGGAATGCACAAGCTGAAGAAGAATTTTATGGACTAGAGGACTTCTTTAAGGATCTTCAAGAAGAATTCAGGAACTGGGAAGCAAACGCTGCTTCCCAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGTGAGCCTTCCTGCTAacatctttatctttttgtttttgaattatgaTGTGTacatgatacacacacacacccacagaGTTGGCAACAGAAATTTTACCTTTCAGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTCAATATTACTGATCAAGATGACAATTATAAAACGCCTCAGGGAGGAAATGCATCTAACTTTTCTGGGACACAGACTCCAAGCAATAGCAGTCAAGGTGAAGCTAGCAAGGGAAACAGAAGCGTTAAGGATAACCTTGATGAAATAGAAGCCACTCTGGCTCAGTTGAAAAAGGAATTAGGCTTATAG 942 0.397 MREQRFGDKMHGVTLPLAANTFLCCAHSYLPLRSLLPLTPPPSCCIPTCKISYGSRFNHSQWKHETKERWSNRMMVVRARRSESPYEVLGVSPSATVDEIKRAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSSSRKKYDSGSRGYDFSQGSRNRNAQAEEEFYGLEDFFKDLQEEFRNWEANAASQGKPKSLWEELAVSLPANIFIFLFLNYDVYMIHTHTHRVGNRNFTFQEIGEEFVEFLEKELNITDQDDNYKTPQGGNASNFSGTQTPSNSSQGEASKGNRSVKDNLDEIEATLAQLKKELGL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0435 313 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 56 311 - -
Ssu8g0435 313 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Ssu8g0435 313 Gene3D DnaJ domain 81 190 IPR036869 -
Ssu8g0435 313 Coils Coil 290 310 - -
Ssu8g0435 313 SUPERFAMILY Chaperone J-domain 34 144 IPR036869 -
Ssu8g0435 313 CDD DnaJ 85 137 IPR001623 -
Ssu8g0435 313 Pfam DnaJ domain 85 145 IPR001623 -
Ssu8g0435 313 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 56 311 - -
Ssu8g0435 313 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Ssu8g0435 313 MobiDBLite consensus disorder prediction 256 297 - -
Ssu8g0435 313 PRINTS DnaJ domain signature 86 104 IPR001623 -
Ssu8g0435 313 PRINTS DnaJ domain signature 104 119 IPR001623 -
Ssu8g0435 313 PRINTS DnaJ domain signature 120 140 IPR001623 -
Ssu8g0435 313 MobiDBLite consensus disorder prediction 258 290 - -
Ssu8g0435 313 SMART dnaj_3 83 140 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0435 Ssu-Chr8 6974094 6977911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0435 86 146 C2H2 Transcription Factor Family AT1G74250 41.791 1.43e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0435 - - gmx:100793601 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0435 8 6974094 6977911 Ssu8g0435 8 6974094 6977911 ECH