Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0426 atgggAGCTGGTTGTTCTAAATTGTGTCTTTGCTGGTGTCCCTCCAACACCAAATCCAATCTTCATGACTTACCTGATAATGAGAATGGAAACGAGGGTGAGAAGAATGATTCTTGGGTTGGCTTCACCGAGTTCACCTTGGACCAACTGAGAAGTGCCACGTCAGCATTTTCACCGGACAACATAGTCTCAGAACACGGTGAGAAGGCTCCCAATGTTGTCTACAAAGGAAGGATTGAAGATGATAGGTTGGTTGCTGTGAAGCGCTTCAACAAGTCTGCTTGGCCAGATCCTCGACAGTTCCTAGAGGAAGCACGGGCAGTGGGGCAACTGAGGAATGAGCGGTTAGCTAACTTGGTTGGGTGTTGTTGCGAAGGAGAAGAGAGATTGCTTGTTGCAGAGTTTATGCCCAATGAAACTCTCTCCAAACATCTCTTTCATTGGGAGAGCCAGCCAATGAAATGGGCAATGAGGCTGAGAGTAGCCTTGTATTTAGCACAAGCATTGGAGTACTGCAGCAGTAAAGGAAGGGCATTGTATCATGACCTTAATGCTTATAGAGTTTTGTTTGATCAGGATGGAAATCCTAGGCTCTCTTGTTTTGGACTCATGAAAAACAGCAGAGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACCCCACCTGAGTATTTGAGGACAGGAAGAATCACCCCGGAAAGTGTAATCTACAGTTTTGGCACACTCTTGCTTGACCTTCTGAGTGGCAAGCATATTCCACCCAGTCATGCACTTGACCTTATACGAGGCAAAAACTTTCTGATGCTGATGGATTCCTGTTTGGAAGGTCATATTTCAAATGATGATGGAACTGAGATAGTGAGATTAGCTTCACGCTGTTTACAGTATGAGCCTCGCGAGAGGCCAAATGCCAAGTCACTTGTGACTGCTCTATCTCCTCTTCAGAAAGAAACTTCAGTTCCATCACAAGTTTTGTTGGGCATACCAGATGAAAGTGTCCCATCAAAGGAAGCAGTTCCATTGACACCTTTTGGTGAAGCTTGTTCTAGAAGAGATCTCACttcaatatatgaaattttggaaAGGGTGGGGTACAAGGATGACGAAGATGTTGCGAATGAGCTTTCCTTCCAAATGTGGACAGACCAAATACaagaaacattaaattttaagaagcAGGGAGATTCTGCTTTCCATGCCAGAGACTTCTCTAAGGCCATTGAATGCTATACACAATTCATTGATGGCGGGACCATGGTATCACCAACTGTGTATGCAAGGCGCTGCTTTTGTTACCTTATGAACAACATGGTAGCAGAAGCACTGGGAGATGCCATGCAAGCTCAATCAGTATCCCCCACCTGGCCAACTGCATTCTATCTTCAAGCAGTGGCCCTCTTCAGCCTTGGGATGGACCATGATGCAGAGGAAAGTCTTAAAGATGGCACAACACTGGAAACCAGAAAACATAGAAATTGA 1479 0.4395 MGAGCSKLCLCWCPSNTKSNLHDLPDNENGNEGEKNDSWVGFTEFTLDQLRSATSAFSPDNIVSEHGEKAPNVVYKGRIEDDRLVAVKRFNKSAWPDPRQFLEEARAVGQLRNERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWESQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHISNDDGTEIVRLASRCLQYEPRERPNAKSLVTALSPLQKETSVPSQVLLGIPDESVPSKEAVPLTPFGEACSRRDLTSIYEILERVGYKDDEDVANELSFQMWTDQIQETLNFKKQGDSAFHARDFSKAIECYTQFIDGGTMVSPTVYARRCFCYLMNNMVAEALGDAMQAQSVSPTWPTAFYLQAVALFSLGMDHDAEESLKDGTTLETRKHRN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0426 492 ProSiteProfiles Protein kinase domain profile. 60 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0426 492 SUPERFAMILY Protein kinase-like (PK-like) 38 316 IPR011009 -
Ssu8g0426 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 492 IPR045845 GO:0004672|GO:0009742
Ssu8g0426 492 SUPERFAMILY TPR-like 388 482 IPR011990 GO:0005515
Ssu8g0426 492 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Ssu8g0426 492 Pfam Protein tyrosine and serine/threonine kinase 74 311 IPR001245 GO:0004672|GO:0006468
Ssu8g0426 492 Gene3D Tetratricopeptide repeat domain 385 491 IPR011990 GO:0005515
Ssu8g0426 492 Gene3D Transferase(Phosphotransferase) domain 1 137 328 - -
Ssu8g0426 492 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 1 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0426 Ssu-Chr8 6866595 6870538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0426 27 314 Glycoside Hydrolase AT3G07070 31.962 1.64e-39 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Ssu8g0426 PK_Tyr_Ser-Thr 4.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0426 - - gmx:100804210 949.118