Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0422 ATGAGGAAGCCAGAGGTGTGTAGTactaaaaacaacaacaacaagctTAGAAAGGGGTTGTGGTCACCAGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAATGGACAAGGGTGTTGGAGCGATGTGGCAAGAAATGCTGGCCTGCAAAGGTGTGGCAAAAGTTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGTTTGCCTGGACGAACcgacaatgaaataaaaaacttttggaATTCAACGATAAAGAAAAGACTTAAGAACATGTCGTCACAGACCACAACCTCAACCTCACCAAATGCAAGCGAGTCCTCGTCTGAGCCTAGTAAAGACCTCAACACGGGAGGGTTTATGTCTGCACAACATCATCAACGTGCAGGCTTTGTCCCTATGTTCAGTTCATCTCCATCACCAATATCAATGCAATCCACAGGTTTCAATACCATGATTGACAGGTTGCCCATGCTGGAGCATGGACTAAACATGCCAGCTTCTGGAGGGTACTTCGAAGGCACAGGGCCATGCTTTTCACAAAGTGAAGTTGACAACAAAGGCTCTTATCTAGAAAACGGAGTGTTTGGGAGTGTAAATATGGGGGTAGAAGGGGATATGTTTGTTCCTCCCCTTGAGAACGTTAGCACCACTGTCAATCATAACCTGAGTGGTACATGCAAGAGAGAAACTAGCAGCGgttactttgatgacataaatAGTATCCTTAATAACTGCAACATTGGCATAGCTGAAAACAAGTCTGGGGTGGAGAATTTGTTTCAACAAGAGTTAGCCACGGGAGAATGGGACTTCGAGGAGTTGATGAAAGATATTTCCTCGTTTCCGTTTGTTGATTTTTCAATCCAATAA 966 0.4224 MRKPEVCSTKNNNNKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSQTTTSTSPNASESSSEPSKDLNTGGFMSAQHHQRAGFVPMFSSSPSPISMQSTGFNTMIDRLPMLEHGLNMPASGGYFEGTGPCFSQSEVDNKGSYLENGVFGSVNMGVEGDMFVPPLENVSTTVNHNLSGTCKRETSSGYFDDINSILNNCNIGIAENKSGVENLFQQELATGEWDFEELMKDISSFPFVDFSIQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0422 321 PANTHER MYB TRANSCRIPTION FACTOR 7 319 - -
Ssu8g0422 321 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Ssu8g0422 321 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Ssu8g0422 321 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Ssu8g0422 321 PANTHER MYB DOMAIN PROTEIN 55 7 319 - -
Ssu8g0422 321 CDD SANT 21 65 IPR001005 -
Ssu8g0422 321 Gene3D - 72 146 - -
Ssu8g0422 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Ssu8g0422 321 SMART sant 70 118 IPR001005 -
Ssu8g0422 321 SMART sant 17 67 IPR001005 -
Ssu8g0422 321 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Ssu8g0422 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Ssu8g0422 321 CDD SANT 73 113 IPR001005 -
Ssu8g0422 321 Gene3D - 15 71 - -
Ssu8g0422 321 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Ssu8g0422 321 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0422 Ssu-Chr8 6816122 6818722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0422 1 321 MYB Transcription Factor Family AT3G08500 45.152 4.58e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g0422 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0422 K09422 - gmx:100799410 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0422 8 6816122 6818722 Ssu8g0422 8 6816122 6818722 ECH
Ssu8g0422 8 6816122 6818722 Ssu3g2685 3 80589880 80591874 PCT