Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0420 ATGGCTGCAACTCCGTCCAAATCCTTTCAAACTCCTTCCAAACGCAACCTGCGATCCCAATCCAACCCCAAATCCTCGCCGGCCGTAACCCCGGACACTCCACAAACCCTACACATTCGCAGATCCACGCGCGCCAAGTCCCTCCTCTTCGATTCTCCCAAACCTCCCCAAACACCTCGCGAAGTTTCGCTCACAACTCCGAAGCGGAGGACTCGACGATCCGTCGACTATGCCGATGATGATTCTGGCGAAGACAAAGTCGCAACCCGCACAATTTCAGCCAGAAATAACGGTCCGGTCGTCGATGCACCGAAGAAGAAGAACGGGAAGGGTTCGATTGAAGTTTCCTTCGCTCCGGTGACGCCGGCTTCATCGGAAAAGACATCAgcgaagaagaggaagagggagGGTGAGGGAAGTGTTCTTACCAGAGTTAAAAGGGGGAAATCGGAGAAGAATCGGGAACAGAGTGCGAAATTGCCTGAGAGGCGATTCTATTACAAGAAAGTGGTTTATGATGGGGGCGAGTTTGGATTGGGGGATGATGTTTATGTGAAGAGGAGAGAAGATGCTAGCTCCGATGACGAAGATCCCGAAATAGAGGAATGTAGGTTGTGCTTTTTCTCGAGCGATGATGAGGTTATGATTGAGTGTGACGATTGTTTGGGTGGGTATCATTTGAAATGCTTGAAGCCGCCGTTGAAGGACGTTCCTGAAGGGGATTGGACATGTGGGTTCTGCGAGGCTCGTAAGATGGGTAGGGGGGCTCAGTTTCCAAAGCCTCCGAAGGGTAAGAAATTAGTTAGAACTATGAGGGAGAAGCTTCTTTCCAGTGATGTGTGGGCTGCTTCATATTGA 858 0.4942 MAATPSKSFQTPSKRNLRSQSNPKSSPAVTPDTPQTLHIRRSTRAKSLLFDSPKPPQTPREVSLTTPKRRTRRSVDYADDDSGEDKVATRTISARNNGPVVDAPKKKNGKGSIEVSFAPVTPASSEKTSAKKRKREGEGSVLTRVKRGKSEKNREQSAKLPERRFYYKKVVYDGGEFGLGDDVYVKRREDASSDDEDPEIEECRLCFFSSDDEVMIECDDCLGGYHLKCLKPPLKDVPEGDWTCGFCEARKMGRGAQFPKPPKGKKLVRTMREKLLSSDVWAASY 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0420 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 257 IPR013083 -
Ssu8g0420 285 MobiDBLite consensus disorder prediction 65 88 - -
Ssu8g0420 285 MobiDBLite consensus disorder prediction 1 158 - -
Ssu8g0420 285 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 136 283 - -
Ssu8g0420 285 MobiDBLite consensus disorder prediction 1 42 - -
Ssu8g0420 285 Pfam PHD-finger 203 249 IPR019787 -
Ssu8g0420 285 SMART PHD_3 202 248 IPR001965 -
Ssu8g0420 285 ProSiteProfiles Zinc finger PHD-type profile. 200 250 IPR019787 -
Ssu8g0420 285 SUPERFAMILY FYVE/PHD zinc finger 189 252 IPR011011 -
Ssu8g0420 285 ProSitePatterns Zinc finger PHD-type signature. 203 247 IPR019786 -
Ssu8g0420 285 MobiDBLite consensus disorder prediction 127 158 - -
Ssu8g0420 285 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 136 283 IPR020793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0420 Ssu-Chr8 6761214 6762071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0420 10 283 Core DNA Replication Machinery Family AT4G14700 42.652 5.78e-49 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu8g0420 PHD 1.2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0420 K02603 - gmx:100798547 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0420 8 6761214 6762071 Ssu8g0420 8 6761214 6762071 ECH