Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu8g0415 | ATGGCGACGACGACGTCGCAGGGTTATCACCAACCTTCCTCCATCGAGGAAGTCCGAACCCTATGGATTGGCGATTTGCAGTACTGGGTCGACGAAACCTACCTCAGTCACTGCTTCGCCCACACCGGCGAGGTAGTCTCCATCAAAATCATCCGCAACAAGATGACAGGGCAACCAGAAGGTTACGGTTTCGTCGAGTTCGTTTCGCACGCCGCAGCAGAGAGGGTTCTCCAGAGCTACAACGGGACGCAAATGCCCGGGACCGAACAAACCTTCAGGCTCAACTGGGCCTCCTTCGGCATCGGCGAGCGCCGGCCCGATGCGGGCCCAGAACACTCCATCTTCGTGGGCGATCTCGCACCCGACGTAACCGATTACCTGCTGCAGGAGACTTTTCGGGCCCATTACCCCTCCGTTCGAGGCGCCAAGGTCGTGACCGACCCCAACACGGGCCGCTCCAAGGGTTACGGTTTCGTTAAGTTCTCCGATGAGAATGAACGAAACCGGGCCATGACGGAAATGAACGGCGTTTATTGCTCCACCAGGCCCATGCGCATTAGTGCTGCGACGCCTAAGAAGACCACCGCCGCTTACGCTGCACCCGCACCTGTACCTAAACCGATATATCCTATCCCGGCGTACACTGTCCCAGTTCAACCACCGGAGTATGATGTGAATAATACTACCATTTTTGTTGGTAATTTGGATCTTAATGTGTCAGAGGAGGAGCTGAAGcaaaattttatgcattttggAGAAATTGTCTCTGTCAAAGTTCAGCCTGGCAAGGGATGTGGTTTTGTTCAATTTGGGACTagAACATctgctgaagaagccattcagaAGATGCAGGGAAAGATGATAGGCCAACAAGTGGTCCGAATTTCTTGGGGTAGGACCCTAACAGCTAAACAGGACTTACCTGGTGGCTGGGGACTACAGATGGATCCAAGTCAATGGAGTGCGTACTATGGGTATGGACAGGGTTATGAAGCCTATGCTTATGGGGCTGCTCATGACCCTTCATTGTATGTATATGGTGCATATGCTGGCTATGCACAATACCCCCAACAGgttGAAGGTGCTCAAGACCTATCGGGTATGTCTGTGCCTACCATGGAACAAAGGGAGGAGTTGTATGATCCCCTGGCAATGCCTGATGTTGATAAGTTAAATGCTGCATACCTTTCAGTACACGGAAGTGCCATTCTGGGGCGGTCCCTCTGGCAAAAAACCTGTTCGTCATCCTTACAGCAAGCTTAG | 1263 | 0.5083 | MATTTSQGYHQPSSIEEVRTLWIGDLQYWVDETYLSHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTAAYAAPAPVPKPIYPIPAYTVPVQPPEYDVNNTTIFVGNLDLNVSEEELKQNFMHFGEIVSVKVQPGKGCGFVQFGTRTSAEEAIQKMQGKMIGQQVVRISWGRTLTAKQDLPGGWGLQMDPSQWSAYYGYGQGYEAYAYGAAHDPSLYVYGAYAGYAQYPQQVEGAQDLSGMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWQKTCSSSLQQA | 420 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu8g0415 | 420 | CDD | RRM2_SECp43_like | 111 | 190 | - | - | |
| Ssu8g0415 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 230 | 293 | IPR000504 | GO:0003723 | |
| Ssu8g0415 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 179 | IPR000504 | GO:0003723 | |
| Ssu8g0415 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 21 | 89 | IPR000504 | GO:0003723 | |
| Ssu8g0415 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 19 | 99 | IPR000504 | GO:0003723 | |
| Ssu8g0415 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 191 | IPR000504 | GO:0003723 | |
| Ssu8g0415 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 10 | 99 | IPR035979 | GO:0003676 | |
| Ssu8g0415 | 420 | SMART | rrm1_1 | 229 | 296 | IPR000504 | GO:0003723 | |
| Ssu8g0415 | 420 | SMART | rrm1_1 | 113 | 187 | IPR000504 | GO:0003723 | |
| Ssu8g0415 | 420 | SMART | rrm1_1 | 20 | 95 | IPR000504 | GO:0003723 | |
| Ssu8g0415 | 420 | CDD | RRM3_NGR1_NAM8_like | 227 | 298 | - | - | |
| Ssu8g0415 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 111 | 299 | IPR035979 | GO:0003676 | |
| Ssu8g0415 | 420 | Gene3D | - | 101 | 199 | IPR012677 | - | |
| Ssu8g0415 | 420 | PANTHER | POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED | 9 | 358 | - | - | |
| Ssu8g0415 | 420 | CDD | RRM1_SECp43_like | 20 | 100 | - | - | |
| Ssu8g0415 | 420 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 9 | 358 | - | - | |
| Ssu8g0415 | 420 | Gene3D | - | 18 | 98 | IPR012677 | - | |
| Ssu8g0415 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 228 | 300 | IPR000504 | GO:0003723 | |
| Ssu8g0415 | 420 | Gene3D | - | 218 | 306 | IPR012677 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu8g0415 | Ssu-Chr8 | 6687419 | 6689970 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu8g0415 | 113 | 318 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 29.858 | 8.03e-15 | 74.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu8g0415 | - | - | gmx:100799421 | 731.095 |