Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0413 ATGTCCACCAAAAACAATATGAAGCAACATGAACATATTTTAATCCCAAGACGTAAAGAGGGAGTAACGATCCACATTCCAAAATCCGTTATACTTCGCTGCTCCAATCCAATCCTATTAATCTTGTTCCGCCCCTATTCACCTAATACAATAATCTCAaGCTTTAGCACTGCAGACAAAAGGACTGTGATTGGAATATGTCAAGATAATTATACTTTACGTTCTTCGCTTCACTTGCACGCCAGGATTTTGCTTATTTATTCTTATCACTTCCCCTTCAGTTATGCTACTAGAATCAACGCAACTGCGAGACTTACTGTAATTCTCTCTCTGATTCCGTGTTCCGTCCAACTAACCAGATTACTTGTCTGGCAGATACAATTCAAGATGAGTTGGAACCCACACATGGAGGTCCATTACAATAACATCAGCTATCCCTATAGTACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTTACATACGAACATGTCAACTTCATTTTTGCTGGTGCCTCACACGCTCAGGAGAGTTCATACCCTTCAACTACAAGCTTTTACAAATCTGTGCTATCTGGACCAGGGAGTACTTCATGCTATCGGGACAGTCATGGTAATGAGGTGAATCATCATGAACAACTGATGGATGAGTATAGAAGGCCTTCGGAAAACTCAGCAACAATCAACGAACAGATGTCAACAGTACGTATAGAAAGGGAAGAAGGAGTAAACAATGCCACACGAGACAGTTCTATTGAATGTCCACGAAGACATCATAATAATTCCAATGATAATCAgGTCATTTGGGAAGACAATATTGATCCTGACAACATGACCTACGAGgaACTACTTGAATTAGGTGAGACAGTTGGAAGTCAGAGCCGCGGTCTCTCCCAAGAACAGATCTCGTCGCTTCCAGTTTCAAAGTACAAGTGTGGCTGCTTCTTCTTCTGGAAGAAGTCACGGAACGAGAGATGCGTGATTTGCCAGATGGAATACAAAAGAGGGGACAAGAGGATTGCTTTACCATGTAAACACCTCTATCATGCTAGCTGTGGGAACAGATGGCTTAGCATCAATAAGGCTTGTCCTATATGTTACACGGAGGTGTTTGCCGACGTGTCAAACCACAAATAA 1137 0.4151 MSTKNNMKQHEHILIPRRKEGVTIHIPKSVILRCSNPILLILFRPYSPNTIISSFSTADKRTVIGICQDNYTLRSSLHLHARILLIYSYHFPFSYATRINATARLTVILSLIPCSVQLTRLLVWQIQFKMSWNPHMEVHYNNISYPYSTAGSFIEYVEGLTYEHVNFIFAGASHAQESSYPSTTSFYKSVLSGPGSTSCYRDSHGNEVNHHEQLMDEYRRPSENSATINEQMSTVRIEREEGVNNATRDSSIECPRRHHNNSNDNQVIWEDNIDPDNMTYEELLELGETVGSQSRGLSQEQISSLPVSKYKCGCFFFWKKSRNERCVICQMEYKRGDKRIALPCKHLYHASCGNRWLSINKACPICYTEVFADVSNHK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0413 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 130 373 - -
Ssu8g0413 378 SMART ring_2 326 366 IPR001841 -
Ssu8g0413 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 130 373 IPR033276 GO:0004842|GO:0016567|GO:0046621
Ssu8g0413 378 ProSiteProfiles Zinc finger RING-type profile. 326 366 IPR001841 -
Ssu8g0413 378 SUPERFAMILY RING/U-box 318 373 - -
Ssu8g0413 378 Pfam Ring finger domain 325 366 IPR001841 -
Ssu8g0413 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 372 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0413 Ssu-Chr8 6634473 6641223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0413 134 377 C3H Transcription Factor Family AT3G63530 39.600 3.32e-53 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0413 K19045 - gmx:100805963 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0413 8 6634473 6641223 Ssu8g0413 8 6634473 6641223 ECH
Ssu8g0413 8 6634473 6641223 Ssu3g2696 3 80752275 80757985 ECH
Ssu8g0413 8 6634473 6641223 Ssu3g2696 3 80752275 80757985 PCT