Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0409 ATGACTCATCCCTACTGCTCCAATGACTTCAATGCTTGGTTTGACCTCAATTCTCCAtgccttttctcttcttcttcatcacctTGCTCCAACCCACCATTCTATTTTCCTTCTACTTATCATCATAACCACACAAATAGCATCTCTTTTACTCAGCATCAATCTTCTCCCTCCTCTCATCCTCCAAAAGAAGCCCTTCCTCTCCTTAACCTAAGCCCACCAAGAGGTGAAGATCTTGAATCTTCCTTTAGTGCCATGAAAGTGAACAACAGAAAGGAGAAAGAACTAAGCATGTCATCTAATAATAACTCTTTGGATGATGATACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAAGCACTACTTCAGCTGATTTAACTTCAAACATATACTCCGCGGAGATTTcagacaaagaagaaaaagccaCGGTTGCTTCTGAGTATTCTCCTAGTAGAATTAACAAGGGTCAGTATTGGATCCCTACCCCGGCTCAAATTCTGATTGGTCCAACACAGTTCTCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGGCCAGAGTCTCTAAGGGGAACGCAACCAACAGCAATGCTTAGACTCCCTTGCTATTGTTGTGCACCCGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGATTTTAGGACCCTTCAAACCCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTAAGGGGTGATTGGAGAACTCACGAGAAGAACTGTGGGAAGCTATGGTATTGCTCTTGTGGGTCAGATTTCAAGCACAAAAGATCTCTTAAAGATCATATCAAGGCTTTTGGGAATGGACATAAAGCTTATGGAAACGACTCTCTTGATCAAGATGATGAAGCGGGCTCTGAAATTGAGCAAGAAAATGAATCTTTAATTTCCAGTCATAGTTGA 1017 0.4051 MTHPYCSNDFNAWFDLNSPCLFSSSSSPCSNPPFYFPSTYHHNHTNSISFTQHQSSPSSHPPKEALPLLNLSPPRGEDLESSFSAMKVNNRKEKELSMSSNNNSLDDDTVTVALHLGLPSTTSADLTSNIYSAEISDKEEKATVASEYSPSRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGNDSLDQDDEAGSEIEQENESLISSHS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0409 338 PANTHER ZINC FINGER PROTEIN WIP2 1 332 IPR043584 GO:0003700|GO:0010468
Ssu8g0409 338 MobiDBLite consensus disorder prediction 48 80 - -
Ssu8g0409 338 SUPERFAMILY beta-beta-alpha zinc fingers 239 277 IPR036236 -
Ssu8g0409 338 Gene3D Classic Zinc Finger 172 195 - -
Ssu8g0409 338 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 332 - -
Ssu8g0409 338 MobiDBLite consensus disorder prediction 312 338 - -
Ssu8g0409 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Ssu8g0409 338 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0409 Ssu-Chr8 6581388 6583438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0409 1 328 C2H2 Transcription Factor Family AT1G51220 59.143 3.40e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g0409 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0409 - - gmx:100789416 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0409 8 6581388 6583438 Ssu8g0409 8 6581388 6583438 ECH
Ssu8g0409 8 6581388 6583438 Ssu3g2697 3 80800557 80802761 ECH
Ssu7g2797 7 58164444 58166846 Ssu8g0409 8 6581388 6583438 ECH
Ssu4g1459 4 24286667 24289027 Ssu8g0409 8 6581388 6583438 ECH
Ssu8g0409 8 6581388 6583438 Ssu3g2697 3 80800557 80802761 PCT