Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0407 ATGGACCATGACAAGACTGGATGCCAAGCACCCCCAGAAGGTCCTATATTGTGCATCAACAACTGCGGATTTTTTGGAAGTGCAGCTACCATGAACATGTGTTCCAAGTGCCACAAAGACATGATGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCATCAAGCAGCAGTGGAAATGAGCCTGCCATTACTACCAATGTGGATGTCTCAGTGGAAATAGGGCCTAAAACGATTGTTGCACAACCTCTAGTTGCTTCAGGTTCAGAGGAGAGTGATGAGGTGAAGCCCAAGGATGGTCCAAAACGATGCAGCAACTGCAATAAACGGGTTGGTTTGACAGGATTTAATTGTCGATGTGGTAACCTTTTCTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGCACGGGATGCCATAGCTAAAGCAAATCCGGTTGTCAAGGCTGAGAAACTTGATAAGATCTAG 516 0.4612 MDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDMMLKQEQAKLAASSIGNIMNGSSSSSGNEPAITTNVDVSVEIGPKTIVAQPLVASGSEESDEVKPKDGPKRCSNCNKRVGLTGFNCRCGNLFCAVHRYSDKHNCPFDYRTAARDAIAKANPVVKAEKLDKI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0407 171 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Ssu8g0407 171 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 171 - -
Ssu8g0407 171 Gene3D - 4 69 - -
Ssu8g0407 171 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 171 - -
Ssu8g0407 171 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Ssu8g0407 171 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Ssu8g0407 171 ProSiteProfiles Zinc finger AN1-type profile. 106 152 IPR000058 GO:0008270
Ssu8g0407 171 Gene3D - 90 167 IPR035896 -
Ssu8g0407 171 Pfam AN1-like Zinc finger 112 148 IPR000058 GO:0008270
Ssu8g0407 171 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Ssu8g0407 171 SMART AN1_Zf_4 112 149 IPR000058 GO:0008270
Ssu8g0407 171 SUPERFAMILY AN1-like Zinc finger 95 166 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0407 Ssu-Chr8 6557469 6557984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0407 8 171 C2H2 Transcription Factor Family AT3G52800 44.767 1.98e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0407 - - gmx:100781607 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0407 8 6557469 6557984 Ssu8g0407 8 6557469 6557984 ECH
Ssu8g0407 8 6557469 6557984 Ssu3g2701 3 80852420 80852938 ECH
Ssu4g1454 4 24211663 24212181 Ssu8g0407 8 6557469 6557984 ECH